PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0095700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 24388.8 Da PI: 7.2531 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H ORGLA03G0095700.1 80 FTCNYCQRKFFSSQALGGHQNAH 102 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.37E-6 | 78 | 107 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MKSSSQEAGE EVSEISSQAT SNNNETCNSS SGKVSLDLSL TVAAAAAAAA SATESSTTDS 60 GGTRPAATAT ATAREPARVF TCNYCQRKFF SSQALGGHQN AHRRERTLAR RAVRLDAFPY 120 GYADVASLPL YGAGLYPIGI QAHASVHHHH PGVAAPAGRA ELRSARALLG PMPFFVQAAG 180 DEDASFGWPG SFRPPPTAAT TIPAAAPAAV NSGSSNSNHG GSVVVQAAAD EPDLTLRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0095700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628354.1 | 1e-132 | zinc finger protein 7 | ||||
Refseq | XP_025879942.1 | 1e-132 | zinc finger protein 7 | ||||
TrEMBL | I1P9B1 | 1e-170 | I1P9B1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0095700.1 | 1e-171 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9847 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 4e-11 | zinc finger protein 4 |