PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0090300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 644aa    MW: 68966.7 Da    PI: 6.7134
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0090300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-16292351155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++gr++A+++d  ++ +g  ++ ++++lg ++t+++Aa+a++ a++k++g
  ORGLA03G0090300.1 292 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqtRKgRQVYLGGYDTEDKAARAYDLAALKYWG 351
                        78*******************988898888446**********99*************97 PP
2AP246.87.2e-15394445155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  ORGLA03G0090300.1 394 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 445
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.84E-20292359No hitNo description
PfamPF008471.0E-12292351IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17292361IPR016177DNA-binding domain
PROSITE profilePS5103219.506293359IPR001471AP2/ERF domain
SMARTSM003806.2E-28293365IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15293360IPR001471AP2/ERF domain
PRINTSPR003674.9E-6294305IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17394454IPR016177DNA-binding domain
PfamPF008478.9E-10394445IPR001471AP2/ERF domain
CDDcd000181.22E-23394455No hitNo description
SMARTSM003801.3E-33395459IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-18395453IPR001471AP2/ERF domain
PROSITE profilePS5103219.045395453IPR001471AP2/ERF domain
PRINTSPR003674.9E-6435455IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MASGGGSSNW LGFSLSPHMP AMEVPSSSEP STAAHHHHHH HPPAAAAAAA GAMSSPPDSA  60
TTCNFLFSPP AAQMVAPSPG YYYVGGAYGD GTSTAGVYYS HLPVMPIKSD GSLCIMEVGM  120
MSSSSPKLED FLGCGNGSGH DPATYYSQGQ EAEDASRAAY QHHQLVPYNY QPLTEAEMLQ  180
EAATAPMEDA MAAAKNFLVT SYGACYGNQE MPQPLSLSMS PGSQSSSCVS AAPQQHQQMA  240
VVAAAAAAGD GQGSNSNDGG EQRVGKKRGT GKGGQKQPVH RKSIDTFGQR TSQYRGVTRH  300
RWTGRYEAHL WDNSCKKDGQ TRKGRQVYLG GYDTEDKAAR AYDLAALKYW GLSTHINFPL  360
ENYRDEIEEM ERMTRQEYVA HLRRRSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD  420
LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDITRYDVD KIMESSSLLP GEAARKVKAI  480
EAAPDHVPIG RELGATEEAS AATVTGTDWR MVLHGSQQQE AAACTEATAD LQKGFMGDAH  540
SALHGIVGFD VESAAADEID VPGGKISGIN FWNSSSLLTS LSNSREGSPE RLGLAMLYAK  600
HHPTAVSLAA MNPWMPMPAP AAAHVMRPPS AIAHLPVFAA WTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0090300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063060.0AK106306.1 Oryza sativa Japonica Group cDNA clone:002-101-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629410.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z021e-142CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLI1P9570.0I1P957_ORYGL; Uncharacterized protein
STRINGORGLA03G0090300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-107AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]