PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0084800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 888aa    MW: 99316.9 Da    PI: 5.0466
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0084800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.62.6e-19701991128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                        lp+G++F+Ptd++l+  +L+++v + +      +  +e+ik+vd      +++P+d+p  ++++    yfF+k+ k+ a++  +++ ++   
  ORGLA03G0084800.1  70 LPRGVEFNPTDNDLL-WHLAAEVGNGQarrhpfI--NEFIKSVDetigFGYTHPQDIP-GTRQDGCASYFFHKNFKECANE--NSKCIR--- 152
                        699************.789999988886776442..233554443333899*******.444556688******9999864..444445... PP

                NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        W+++g+  +++  +g+l g+k+++v+y  + + ++++ tdW +h+y++
  ORGLA03G0084800.1 153 WQKSGNPISITL-DGNLQGCKEVFVLYayETDGNNPQITDWRLHQYHI 199
                        ************.999**********97767888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-2562217IPR003441NAC domain
PROSITE profilePS5100521.82970217IPR003441NAC domain
PfamPF023653.3E-871199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MAKDKEVGPP PPPCVDSDHE DLPLAERRRR LLRPPAESKP PAPERREASA AAAAAAEDSG  60
GAAQQGWPGL PRGVEFNPTD NDLLWHLAAE VGNGQARRHP FINEFIKSVD ETIGFGYTHP  120
QDIPGTRQDG CASYFFHKNF KECANENSKC IRWQKSGNPI SITLDGNLQG CKEVFVLYAY  180
ETDGNNPQIT DWRLHQYHIE STEKDEGELV VSKIFYELEK NQFKWAEKSH AQSAQGASAI  240
DDDSKEELQL DNHSFNMITE NSSVQGNENK QKQTQTGTCP NLDKLSYFNV VSNMHIGNQI  300
NDHDEIEELD HMSLQERYRI LMAENHSSSA AVVSSEQCAI DGLENSCKPG TNGMIPKRIH  360
EGTAFRDGMY SMLQEISSAP AIIGSIDNDN NRRLLTEGLS NNQQSHEAGC ESGFLSTSSS  420
AAPPQCQVVC SHDLLVNGKT LIYSRDPSSS STPTFGDKNI QLEGTDDRTL LVDVKLEPAL  480
EGDFTEKITS SVQRTDPNHG TEGSNLVGSI NSVSSAISKR ISEAARSNPE NSHVEGLLPS  540
SRIKSEVTGS ELPLVVCGLT SISIAELTAK KTNTLNHDGV LAYCSRKRKR RKTLRDPSEK  600
TLEEDSLRND EGTAYFSRQR RRRKTATDSI ETALEEDAPG LLQILLDKGI LVKEIKLYGV  660
EEEDDMVPDC TESDFQDLEN VITKLFPQRT SLLKSALRHE KGEKAIYCLT CLISLIEQSR  720
YLQFRDCPVE WGWCRDLQSF IFIFKSHNRI VLERPEYGYA TYFFEIVKSL PIQWQIQRMV  780
TAMKLSGCGR TALIENRPLL IGEDLTEGEA RVLEEYGWVP NSGLGTMLNY RDRVVHDRWN  840
ERSGTDWKTK IGKLLMNGYS EGHLVLSHFP TKVGKIEDDT EIKQEDPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1585590RKRKRR
2585591RKRKRRK
3586591KRKRRK
4607620RNDEGTAYFSRQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0084800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1052830.0AK105283.1 Oryza sativa Japonica Group cDNA clone:001-116-E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632079.10.0uncharacterized protein LOC4332096
TrEMBLI1P9020.0I1P902_ORYGL; Uncharacterized protein
STRINGORGLA03G0084800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.13e-39NAC domain containing protein 85