PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0068800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 561aa    MW: 58376.8 Da    PI: 8.5508
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0068800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-057193123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  ORGLA03G0068800.1 71 FVCEICNKGFQRDQNLQLHRRGH 93
                       89*******************88 PP
2zf-C2H213.10.00028147169123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H +t+
  ORGLA03G0068800.1 147 WKCDKCSKKYAVQSDWKAHTKTC 169
                        58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.72E-77093No hitNo description
SMARTSM003550.0177193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355190112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.72E-7142167No hitNo description
SMARTSM00355140147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MEVETSSGTA ERGAGAGAQQ QPPPQPPAKK KRALPVDGDG DRSSVRSRGG ADPDAEVIAL  60
SPKTLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSGKEVRKR VYVCPEPTCV  120
HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHTKTCG SREYRCDCGT  180
LFSRRDSFIT HRAFCDALAE ESAKARAAPP PPADEDGTSA SAGAPPPQAP LPPPAPVPAP  240
APPPPPAAAP APAAQPEQRD RDAALDQFAT PAPAPAPPPV TAPPPPPVAA PNDCVSSSSS  300
GVAPTSQSLL SSMFAPPSVA QAPQYADPIG VGAGGHQERA VPAKPPALCL APNASSSLFT  360
APVPADRQQF APPPPPSPSP HMSATALLQK AAQMGATSSS SSFLRCLGLD MSSSSSAPPS  420
SSGQQQQHHH HHHQETMQVP LPASSLPEWP PRLQPEPSPM LSSGLGLGLP YDATGGPVSL  480
PELMMGQSTL FSAKPATLDF LGLGVSPTGA STSRGFPTFI QPIGGAVSLA GSATVAAETF  540
GAAHGGQANP WERNPSSSPI L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35143204364Zinc finger protein JACKDAW
5b3h_F2e-35143204364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0068800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1156870.0AC115687.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence.
GenBankAC1164260.0AC116426.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632656.10.0protein indeterminate-domain 1
TrEMBLI1P8J20.0I1P8J2_ORYGL; Uncharacterized protein
STRINGORGLA03G0068800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-89indeterminate(ID)-domain 2