PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0037300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1363aa    MW: 149875 Da    PI: 6.353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0037300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-0512531278123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                         ++C    C+++F +k +L+ H+r+ +
  ORGLA03G0037300.1 1253 FQCDieFCDMTFETKAELRAHQRNiC 1278
                         899999*****************877 PP
2zf-C2H212.70.0003912781300323
                         ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                         C+   Cgk+Fs++ +LkrH+ +H
  ORGLA03G0037300.1 1278 CTdeSCGKRFSSHKYLKRHQCVH 1300
                         77778***************998 PP
3zf-C2H213.80.0001713361362123
                         EEET..TTTEEESSHHHHHHHHHH..T CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                         ykC+  dCg+sF+  s++ rH ++  H
  ORGLA03G0037300.1 1336 YKCSapDCGQSFRYVSDYSRHRKKfnH 1362
                         99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.1E-132970IPR003349JmjN domain
PROSITE profilePS5118313.6053071IPR003349JmjN domain
PfamPF023753.9E-133164IPR003349JmjN domain
SuperFamilySSF511973.57E-28213395No hitNo description
SMARTSM005588.5E-49230399IPR003347JmjC domain
PROSITE profilePS5118434.774233399IPR003347JmjC domain
PfamPF023732.8E-37263382IPR003347JmjC domain
Gene3DG3DSA:3.30.160.601.9E-412471275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551212531275IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.53812531275IPR007087Zinc finger, C2H2
SMARTSM003552.312761300IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.00612761305IPR007087Zinc finger, C2H2
PROSITE patternPS00028012781300IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-612781312No hitNo description
Gene3DG3DSA:3.30.160.604.5E-712821306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.27E-1113001356No hitNo description
SMARTSM003556.6E-413061330IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.96713061335IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-1113071330IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013081330IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-1013311358IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.36513361363IPR007087Zinc finger, C2H2
SMARTSM003550.1413361362IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013381362IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1363 aa     Download sequence    Send to blast
MPPQPPPAAS ASASAPDPAV PAWLRGLPRA PEYRPTESEF ADPIAFLSRV EREAAAYGIC  60
KVIPPHPRPS RRFVFAHLNR SLVSSCDAPA PSPAAASDSS IPPSSSSSPP PASAAVFTTR  120
HQELGNPRRG RPTPQVLKQV WQSGERYTLD QFESKSRAFS KTHLAGLHEP TALAVESLFW  180
KASADRPIYI EYANDVPGSG FAAPVQLQRK KKQKRETAPM DEWEKSSGWR LSNSPWNLQA  240
IARAPGSLTR FMPDDVPGVT SPMVYIGMLF SWFAWHVEDH DLHSLNFLHT GAPKTWYAVP  300
GDRAVELEEV IRVHGYGGNT DRIASLAVLG EKTTLMSPEV LIDNGVPCCR LVQYPGEFVV  360
TFPRAYHVGF SHGFNCGEAA NFATPQWLKF AKEAAVRRAV MNYLPMLSHQ QLLYLLAVSF  420
ISRNPRELLS GIRTSRLRDR KKEDRELLVK QEFLQDMISE NELICSFLGK SLVDKERYKL  480
SCEKEICSNV LPCSPNDGSS GCPLIANRSS SPVENANLSH QDVKPIRSDI SLMGKEFNGT  540
LGKHIGTSCS CSSENTIHPY GDTETPEKKI PSDCPGSELS KQSGRGDVNV PDVEGSEETI  600
SWNTGCAFAR PRIFCLQHAL EIEELLASKG GVHALIICHA DYVKLKALAI SIAEEIEFQF  660
DYKDVALANA SKSNLHLINI SIDDEGYEEE GTDWTSRMGL NLKHSSKIRK ETSESQEQPP  720
LSFWGLFSKP SPISVVSNLK WLCRKARTPY KVIGYASSPD VVATPDKVKP AVTKTQIDTS  780
GNAHENIGSE QTLQQDCVLQ ESNDVADMCK RRKVNDQDGH SLINIPIAVA EYPMMHQVCE  840
RPVSVSACDD PICSFDSQDS PTTVAVSAGK PTREQCGAES TELSTVQQFL DNGLIAEGGS  900
MNFISNHEHL ESDNATSVCK DEQLQVQQDQ LAMVLCNNPN TELVAGELHG GAASSTLENE  960
DSCGNTSYCS DTVLKNSKPD TDDQPETCDR SVVLVTPKSS CDQMISSSDR SCSLTLDCPV  1020
STDAAFSSEK LSMAHDLMGS ELQAVHNSKA EVAASLTDVK GAKLNSIHTA QLPHESPSSD  1080
FIISEGAQSA SATAIPRKNG TSMHTESNSI DILLGVLADE SKVSSGKDEV GKASLTLMTL  1140
AGNDQSADDV TQDEVAEITD PSHGFCASDI VSRSIGSSNR TNIICYARRK HKRKSGSEFN  1200
INSPQSLGSF VRSPCESLRP RTRPAIVEDM TNETKTAEAS TANKRKKAKV EAFQCDIEFC  1260
DMTFETKAEL RAHQRNICTD ESCGKRFSSH KYLKRHQCVH RDERPFKCPW DGCPMTFKWL  1320
WAQTEHIRVH TGERPYKCSA PDCGQSFRYV SDYSRHRKKF NHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A4e-74234138346Transcription factor jumonji (Jmj) family protein
6ip4_A4e-74234138346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207214QRKKKQKR
2208215RKKKQKRE
311871193RRKHKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0037300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630480.10.0lysine-specific demethylase SE14-like isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLI1P7M70.0I1P7M7_ORYGL; Uncharacterized protein
STRINGORGLA03G0037300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein