PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA03G0024300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 316aa MW: 34927.3 Da PI: 7.7186 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.4 | 6.1e-49 | 19 | 145 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPt+eel+++yL + v gkkl++ ++i +++iy+++PwdLp ++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s ORGLA03G0024300.1 19 PGFRFHPTEEELLDFYLSRVVLGKKLHF-NIIGTLNIYRHDPWDLPGMAKIGEREWYFFVPRDRKAGNGGRPNRTTERGFWKATGSDRAIRS 109 9*************************99.89***************888999**************************************** PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++glkktLvfy+grap+g+ktdWvm+eyrl ORGLA03G0024300.1 110 SgdPKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 145 9766778***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-58 | 11 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.552 | 17 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-25 | 19 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045792 | Biological Process | negative regulation of cell size | ||||
GO:0048281 | Biological Process | inflorescence morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
MAAAVAVAGP SMEVEQDLPG FRFHPTEEEL LDFYLSRVVL GKKLHFNIIG TLNIYRHDPW 60 DLPGMAKIGE REWYFFVPRD RKAGNGGRPN RTTERGFWKA TGSDRAIRSS GDPKRVIGLK 120 KTLVFYQGRA PRGTKTDWVM NEYRLPDYGA ARAAAPPPKE DMVLCKIYRK ATPLKELEQR 180 ASAMEEMQRG SSHGDYTATR ASLVHDASAS TGDDYFSSDD VHDSGFLIQS SSSSAAPSGS 240 SSKNGGAGAP REAKKEEADV TVTVASATSL QLPAVSQLPS LQLPAMDWLQ DPFLTQLRSP 300 WQDQHCLSPY AHLLYY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-50 | 19 | 172 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-50 | 19 | 172 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-50 | 19 | 172 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-50 | 19 | 172 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
4dul_A | 8e-50 | 19 | 172 | 19 | 167 | NAC domain-containing protein 19 |
4dul_B | 8e-50 | 19 | 172 | 19 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA03G0024300.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK107090 | 0.0 | AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630174.1 | 0.0 | NAC domain-containing protein 22-like | ||||
Swissprot | Q10S65 | 0.0 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0D3FDG0 | 0.0 | A0A0D3FDG0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NPA5 | 0.0 | A0A0E0NPA5_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XC49 | 0.0 | A2XC49_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1P797 | 0.0 | I1P797_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI03G02380.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0133000-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA03G0024300.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART03G02620.1 | 0.0 | (Oryza barthii) | ||||
STRING | OBART03G02630.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17040.1 | 7e-88 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
---|---|---|---|
|