PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0021400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 404aa    MW: 42451.4 Da    PI: 8.1819
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0021400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1018e-322174255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR 
  ORGLA03G0021400.1 21 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 74
                       8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6531777IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-311777IPR009057Homeodomain-like
SuperFamilySSF466897.35E-161976IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-242174IPR006447Myb domain, plants
PfamPF002498.1E-102273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MVGGGRERNG GVRQYNRSKV PRLRWTPDLH HCFVHAIHKL GGQDKATPKR VLQLMGVGGL  60
TISHVKSHLQ MYRNMRNDLG MQGIQVQQVD QEHTYGGGVE VWTDMQQCDH DECDVPCCSC  120
HSPKPRKEPL LHLQLKSSGM NIDEPGTRAR IAAPNVRSCR DDAAASATET RRRRGGRPEE  180
VDDDASASAS PRISQLQLLR LRGHGIRESD MSPSTSLQCY YVRSQRTTTM PPGAAAAAAG  240
GDGGSQCYAA PRYSSSSKLK FLGFVVTSGP PPPPPPPPRL PPPAACCCGS DDNIPFQVGT  300
FAPHRVAPPT ASCGGGGGGR AEARPSSSYR SVWFEPAAAA AASNNGVAPD GEHDDGCSLS  360
LSLALDTGCS GAGAGAGGSL VSSTTSSSSG SRISLDLSLS TLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-182276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-182276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-182276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-182276357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0021400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880094.10.0uncharacterized protein LOC4331498 isoform X1
TrEMBLI1P7680.0I1P768_ORYGL; Uncharacterized protein
STRINGORGLA03G0021400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.15e-26G2-like family protein