PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0016400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 591aa    MW: 62826.2 Da    PI: 6.8655
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0016400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.3e-093443811954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  ORGLA03G0016400.1 344 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 381
                        564459******************************88 PP
2BELL87.71.2e-28207276372
               BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         elq+ k kL  +leeVd+rY++y+eq+++v++ Feavag  +a  Yt++A ++iSrhFr+L+d i+ q+
  ORGLA03G0016400.1 207 LELQRLKDKLYIMLEEVDRRYRRYCEQMRAVAGGFEAVAGERAAGAYTAVAARTISRHFRSLRDGIVAQL 276
                        58999**************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.8E-45138274IPR006563POX domain
PfamPF075262.5E-42144272IPR006563POX domain
PROSITE profilePS5007112.017322385IPR001356Homeobox domain
SMARTSM003894.7E-9325389IPR001356Homeobox domain
CDDcd000862.79E-12325386No hitNo description
SuperFamilySSF466891.67E-17326392IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-28328391IPR009057Homeodomain-like
PfamPF059207.7E-18342381IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MAHDPNLGFA DYFSAADASA SSVTTLMPAM DEAAPELFGL QAGMELLGVR GLGMSMMPGA  60
AGKVAALVAD AGDDGGGGST MRFLSEQHQQ PSQAPLSLSL CRPDGVLHLG GAARPQHQLA  120
PAAPWMTHHD ASSSAPQVHG AWHLRSSRFL LPAQQLLQEF CSLPVDSTKR GNGAKAATQQ  180
EDGRGDGSSS SSASWNPSPQ IQAMEALELQ RLKDKLYIML EEVDRRYRRY CEQMRAVAGG  240
FEAVAGERAA GAYTAVAART ISRHFRSLRD GIVAQLQAAR KALGEKDVSA AGTTRGQTPR  300
LRVIDQCIRH HKSLQGVAAM DSHPWRPQRG LPDRAVTILR AWLFEHFLHP YPSDVDKHIL  360
ARQTGLSRSQ VSNWFINARV RLWKPMVEEM YVEEMKDQDG GDGSGGQGSL NPKPTFSHAS  420
EARGGQQLVV GDGDGGEQKP TRAQLRHDAG SLASVVNVDV AAGAAGVARL HQAENFGIMD  480
HLDFDAYDDS HQQQQHGGFG GVSLTLGLQQ HGSHGGGGVN IAFGAPGSAH GGAGFLYPGE  540
QMAPDAVHPG HGHHVIGGQF GVAMDGDAAS HAQERYRSLS AGFHLLRDLA G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-17331388158Homeobox protein Meis1
4xrs_B6e-17331388158Homeobox protein Meis1
5bng_A6e-17331389159Homeobox protein Meis2
5bng_B6e-17331389159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0016400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1212070.0AK121207.1 Oryza sativa Japonica Group cDNA clone:J023088C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628192.10.0homeobox protein BEL1 homolog
TrEMBLI1P7180.0I1P718_ORYGL; Uncharacterized protein
STRINGORGLA03G0016400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.14e-77TALE family protein