PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0007700.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 832aa MW: 89390.1 Da PI: 4.4193

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0007700.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.2e-07	812	832	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G+C+ G++C++ H+ ORGLA03G0007700.1 812 ICK-FHENGYCRKGASCNYLHP 832 799.9999*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.126	807	832	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.3E-5	809	831	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-4	812	832	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence Send to blast
MPQTSSSAHS NVESHHDHYP SWSQVQHDPK NSLQAGSGKD LNSRYDIAQK LPSQRITRDV 60 PSPVFAWSPS ESRTASSQHE GSCLSSTTNL CTHDELHSSI ASAKAKSFAP ATPVEDRGSS 120 SPSGMLSLSE RAPICSPQSA PSASASDTCK MEENMNQQKT LEADISNTSV NQSPESKILP 180 ESSPDNQDAE HEYRSPPPIS ESKELSPQSR TTPGSSPDNQ DTEREYPSPP PISGSKEISP 240 QSRTILESSP DNQDNGHEYP SPPPIPESIE LSPHSKALPE SSPDNQDIEP ECSSPPQIPE 300 SKELSRQSKI LPESSPGKQD IEPECPSPPQ IPESKELSQQ SKILPESSPD NHDIKCEYSS 360 PTPIPESKEL SLQSKILPES SSDNQDIKCE DPSPTPISKS KEVSPQSKIL SESYLDNQDV 420 ERECPSSILI TESKELAVDL PGSISLAPEK TASTDVGENS SLAFIFPKST LAGDDALKSV 480 FDMAKAHLEC EDSKVKEELY VESTVVIRDD MVVNPASGVE SIDMSENLLE SLMEQSCGTF 540 YMDGTTALEG FLSGSTKEEP QCSSPIALST CSSPIALSPW GEHGYYQGDS VGSSLWGVQD 600 DDPIGNIWPL SSQAPALQYS SAGSTAHFID EATVTHGNNG VVLSSTPGEE VGLPNSGVCT 660 DWGLVEQVNP EANDASVSMI DKNSGLVDSQ PSANDGSDVG TARNTNHNTN LSLNHETAVP 720 LSRSSGEASR KHGFITDLNV ATSEEALGNT KNWNPSAGNA NRGSQRNHHR DRYSQISESW 780 LLSSNYSRSR SDGFGTGGSS RSTPRGQTQR GICKFHENGY CRKGASCNYL HP

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence Send to blast

MPQTSSSAHS NVESHHDHYP SWSQVQHDPK NSLQAGSGKD LNSRYDIAQK LPSQRITRDV  60
PSPVFAWSPS ESRTASSQHE GSCLSSTTNL CTHDELHSSI ASAKAKSFAP ATPVEDRGSS  120
SPSGMLSLSE RAPICSPQSA PSASASDTCK MEENMNQQKT LEADISNTSV NQSPESKILP  180
ESSPDNQDAE HEYRSPPPIS ESKELSPQSR TTPGSSPDNQ DTEREYPSPP PISGSKEISP  240
QSRTILESSP DNQDNGHEYP SPPPIPESIE LSPHSKALPE SSPDNQDIEP ECSSPPQIPE  300
SKELSRQSKI LPESSPGKQD IEPECPSPPQ IPESKELSQQ SKILPESSPD NHDIKCEYSS  360
PTPIPESKEL SLQSKILPES SSDNQDIKCE DPSPTPISKS KEVSPQSKIL SESYLDNQDV  420
ERECPSSILI TESKELAVDL PGSISLAPEK TASTDVGENS SLAFIFPKST LAGDDALKSV  480
FDMAKAHLEC EDSKVKEELY VESTVVIRDD MVVNPASGVE SIDMSENLLE SLMEQSCGTF  540
YMDGTTALEG FLSGSTKEEP QCSSPIALST CSSPIALSPW GEHGYYQGDS VGSSLWGVQD  600
DDPIGNIWPL SSQAPALQYS SAGSTAHFID EATVTHGNNG VVLSSTPGEE VGLPNSGVCT  660
DWGLVEQVNP EANDASVSMI DKNSGLVDSQ PSANDGSDVG TARNTNHNTN LSLNHETAVP  720
LSRSSGEASR KHGFITDLNV ATSEEALGNT KNWNPSAGNA NRGSQRNHHR DRYSQISESW  780
LLSSNYSRSR SDGFGTGGSS RSTPRGQTQR GICKFHENGY CRKGASCNYL HP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0007700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ828863	0.0	JQ828863.1 Oryza sativa Japonica Group cultivar Kita-ake CCCH-type zinc finger protein (Ehd4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630499.1	0.0	zinc finger CCCH domain-containing protein 20 isoform X1
Swissprot	Q0DVU4	0.0	C3H20_ORYSJ; Zinc finger CCCH domain-containing protein 20
TrEMBL	I1P6T1	0.0	I1P6T1_ORYGL; Uncharacterized protein
STRING	ORGLA03G0007700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2709	18	22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]