PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0005100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 33852.8 Da PI: 6.118 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.4 | 3.5e-50 | 23 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhP+deelv +yL++k +++++ +++++ evd++ +ePwdLp+ +k +++ewyfFs r++kyatg r+nra k+gyWkatgkdk++ ORGLA03G0005100.1 23 LPPGFRFHPSDEELVGYYLRNKQQQQQTAATSMLVEVDLHACEPWDLPEVAKVGSDEWYFFSWRERKYATGWRRNRASKQGYWKATGKDKPI 114 79*************************999999***************88888999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 l+ ++ g +ktLvfy+grap+g+kt Wvmhe+rl ORGLA03G0005100.1 115 LH--PTVAGARKTLVFYSGRAPNGRKTAWVMHEFRL 148 *9..7789**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-57 | 11 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.434 | 23 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-26 | 24 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDGLISDDSM MMGGEVRAIE SRLPPGFRFH PSDEELVGYY LRNKQQQQQT AATSMLVEVD 60 LHACEPWDLP EVAKVGSDEW YFFSWRERKY ATGWRRNRAS KQGYWKATGK DKPILHPTVA 120 GARKTLVFYS GRAPNGRKTA WVMHEFRLLH HHHHHPNPNI QNMQQQEGDD WVLCRVFRKG 180 NNSNGQPLAT SSPPAHHLVE SLISSPAPTI MSDHDRLFTI QLPHHQHCDE QYFSLDDDEQ 240 HQQQLLDLSV LQAPTSFESE QAPGHGGMEI NIAEMESFDT TCAALQDASD YCMQLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-47 | 20 | 181 | 12 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0005100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070416 | 0.0 | AK070416.1 Oryza sativa Japonica Group cDNA clone:J023051N16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629924.1 | 0.0 | NAC transcription factor 32 | ||||
Swissprot | Q84TE6 | 2e-59 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0D3FCS9 | 0.0 | A0A0D3FCS9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1P6Q5 | 0.0 | I1P6Q5_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0005100.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART03G00700.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16917 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-62 | NAC domain containing protein 74 |