PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA02G0354200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 264aa MW: 28599.4 Da PI: 10.3204 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.5e-08 | 76 | 117 | 2 | 40 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W eE ell +a++++++g +W+ +++ +g+gR+ +++ ORGLA02G0354200.1 76 KPWGREEIELLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 117 68************************************9876 PP | |||||||
2 | Myb_DNA-binding | 24.4 | 6.7e-08 | 207 | 250 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W++ + lv+a k ++++ +W+++a+ ++ g+t qck ++ ORGLA02G0354200.1 207 AWSEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTMVQCKKKF 250 7********************************.********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-5 | 71 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 7.219 | 73 | 128 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-5 | 74 | 127 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.79E-7 | 76 | 119 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-6 | 76 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.56E-5 | 77 | 117 | No hit | No description |
PROSITE profile | PS51293 | 8.965 | 203 | 258 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-7 | 204 | 256 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-9 | 205 | 256 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 207 | 254 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.06E-6 | 207 | 250 | No hit | No description |
Pfam | PF00249 | 9.0E-7 | 207 | 250 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MERLKKLCDS MENKDTTEKA RLLRGALSKE DSSGTSNEGK KIQANGVDGS KAKSTSSGEK 60 VTQGNTLSNY EKKEEKPWGR EEIELLRKAI QKYPKGTSRR WEVVSEFIGT GRSVEEILKA 120 TKTVLLQKPD STKAFDSFLE KRKPAPSIAS PLSVRTETVG LPTEKASGDA SSKAPAQPAS 180 SKTSDEKAPA PAPVSNGTPS GTADPEAWSE AQVLALVQAL KAFPKDASQR WERVAAAVPG 240 KTMVQCKKKF AEMQKNFRSK KGAE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA02G0354200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633497.1 | 1e-176 | dnaJ homolog subfamily C member 2 | ||||
TrEMBL | I1P6D6 | 0.0 | I1P6D6_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0354200.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | ORGLA04G0069500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8119 | 34 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11450.1 | 7e-67 | DnaJ domain ;Myb-like DNA-binding domain |