PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0342600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1003aa    MW: 112032 Da    PI: 6.4521
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0342600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11772.4e-55111272117
               CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                        +ke ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np
  ORGLA02G0342600.1  11 HKEaRSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNP 102
                        67779*************************************************************************************** PP

               CG-1  93 tfqrrcywlLeeelekivlvhylev 117
                         fqrrc+w+Le ++e+ivlv+y+ev
  ORGLA02G0342600.1 103 CFQRRCFWMLEPAYEHIVLVQYREV 127
                        ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.3497133IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7010128IPR005559CG-1 DNA-binding domain
PfamPF038597.5E-4713126IPR005559CG-1 DNA-binding domain
SuperFamilySSF812965.6E-16451533IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.108.0E-6451541IPR013783Immunoglobulin-like fold
PfamPF018333.6E-7451532IPR002909IPT domain
SuperFamilySSF484031.21E-15482526IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.21E-15646743IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.0E-15646742IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.769648740IPR020683Ankyrin repeat-containing domain
CDDcd002041.66E-9653740No hitNo description
PfamPF127964.1E-7664742IPR020683Ankyrin repeat-containing domain
SMARTSM002482.4E-4681710IPR002110Ankyrin repeat
PROSITE profilePS5008810.927681713IPR002110Ankyrin repeat
SMARTSM002481800720749IPR002110Ankyrin repeat
SMARTSM0001527801823IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529802831IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.41E-6857907IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.95860889IPR000048IQ motif, EF-hand binding site
SMARTSM0001519861881IPR000048IQ motif, EF-hand binding site
PfamPF006120.022862880IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-6882904IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.64883911IPR000048IQ motif, EF-hand binding site
PfamPF006121.4E-5884904IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    Send to blast
MSLSFDINVL HKEARSRWLK PSEVYYILQN HERFPITPEP PKKPPSGSLF LYNRRVNRYF  60
RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVGAA EGRYNSASLL NGPTDSLSVL SYPNATYGNQ YLGSTSGVSD GSESRHSNLS  180
SVTEVSSYSA NKDNGILQSI QELSQSTIMG APALGQSSLE QSIEVRWVDN SNSTNKSGLN  240
RALKQIVEQL SLGDDEDDDY IHQAQPFDFI TNIEAPDRQR DASRNVSGGS QAKQIRAEGM  300
QNGLGRGIPS SWEDVLQSSS GFPAPSIYQS TPHYPQNSEY QPPGSLYNSD MQQISAAKRF  360
LLETEDSIDS PSYNYVPREE GNNGTNTLSV HDYSLQSSLN PDWKKTAPLT LQSNLYGSEI  420
PSLLLDHGQF ESLSSGENTR LILGQNPRFS IREVSPEWTY CYEITKVIIT GDFLCDPSSS  480
CWAVMFGDSE VPAEIVQAGV LRCHTPLHSS GKLTICVTSG NREICSEVKD FEFRAKSTAS  540
SFLDISPSSR SLKSSEELLL LAKFVRMLLC ENGSHANSNG DPQSVQCPKL KMNDEHWQRL  600
IDELKGGCEN PLNVSDWIME ELLKSKLQQW LSVKLQGYDG IACSLSKHEQ GIIHLISALG  660
YEWALSSILS ADVGINFRDT NGWTALHWAA YFGREKMVAA LLAAGASAPA VTDPTAQDPV  720
GKTAAFLASE RGHLGLAAYL SEVSLTSYLA SLTIQESDTS KGSAAAEAER AVESISQRNA  780
QLHGGTEDEL SLKDSLAAVR NAAQAAARIQ NAFRAFSFRK RQQKTARLKD EYGMTQEDID  840
ELAAASRSYY QSLLPNGQFY DKAAVSIQKK FKGWKGRRHF LNMRRNAVKI QAHVRGHQVR  900
KKYKTFVSTV SVLEKVILRW RRKGHGLRGF RAEQTAMAEA EEDDKDDDDD DFNDDEAVKV  960
FRRQKVDESV KEAMSRVLSM VDSPEARMQY RRMLEEFRQA TAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0342600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220010.0AK122001.1 Oryza sativa Japonica Group cDNA clone:J033110J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635911.10.0calmodulin-binding transcription activator 4 isoform X1
TrEMBLI1P6200.0I1P620_ORYGL; Uncharacterized protein
STRINGORGLA02G0342600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-150Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains