PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0335800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 647aa    MW: 71550.3 Da    PI: 5.1862
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0335800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06113134426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        ++C +f++ G C  GdrC F H 
  ORGLA02G0335800.1 113 VPCYYFQK-GMCVKGDRCAFLHL 134
                        69******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.9E-41644IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6381645IPR000571Zinc finger, CCCH-type
PfamPF156631.9E-111771No hitNo description
PROSITE profilePS5010311.0284773IPR000571Zinc finger, CCCH-type
SMARTSM003562.54972IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554109136IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5110135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5112133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4114133IPR000571Zinc finger, CCCH-type
PfamPF146081.6114133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MDSAVRPPVD DEEARRRRST DCIYFLASPL TCKKGSECEY RHSDAARMNP RDCWYWFNGN  60
CANPKCSFRH PPLDGLVGAL TTPRTSQQSA PQVSVPAQAP VPNPASGTAK QGVPCYYFQK  120
GMCVKGDRCA FLHLPQATGS PAPQHTTKVF APASVPHPQL KNSWTKPNSS AQQNAPPAIF  180
DKPKDSAHNG KTAQKQNLTN RAGHSSGIIH DKKGSYMPLG VTKNYRPPPS TGDDLAENGV  240
EMGEFVREPS AGSDVLTGGA DDNAEQSLRE DRGAYRRTNG EQHIGMLRQT HDSYGFERSH  300
RGSAEKLLSE SRFSQREPMP LTADSSDLRQ RLLKQRRLNN PRSGQVSDRH NVYPEDERHD  360
RHRRRGEEQA SHDGVSSSRL RGRIRLPAET TFDRLGLQPE KERDRGPRAR LSPPSQTDLR  420
GKLHDRLKAK PNEDVSGNVQ SSLSKANEDA ESLNFAGPKS LAELKAKKVA GSLMKSSRSL  480
TGPVRMTSEI VTIKDSSDPV LFDGPKPLNA ILKRKREADS GNATDFGSKR EEHSGGDEEG  540
SQNDFRNIED DIVGMNTEGN GEEAFQPEDD VVYGDSLSPA DDIAAEAADD ASRELEEQQD  600
VETAEEYDYE MDDVNAAEEN DYQEYEDEDD DLEDDDDFAR KVGVMIT
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0335800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040820.0AP004082.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1149_C12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626088.10.0zinc finger CCCH domain-containing protein 19 isoform X1
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLI1P5V20.0I1P5V2_ORYGL; Uncharacterized protein
STRINGORGLA02G0335800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]