PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA02G0333700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 236aa MW: 24165.1 Da PI: 10.7618 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.4 | 1.4e-39 | 31 | 141 | 2 | 95 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg... 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +s++ ++s + ORGLA02G0333700.1 31 AVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSNSTSNS-Ndll 121 789*************************************************************99999888755555555444444.3588 PP TCP 89 .................kaaksaa 95 + ++ ORGLA02G0333700.1 122 lpraapfilgkrlraadD----HT 141 887777777766533322....22 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 37 | 91 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.0E-33 | 37 | 131 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MTTRPDGGGG GGGAPDKQLV PASNANGTAL AVRKPPSKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTSSPSSLR SNSTSNSNDL 120 LLPRAAPFIL GKRLRAADDH TTSPAPAPDA TAPTQAFWAL PARADFGQLW SFAAAPEMMV 180 AAAAAPAMPG EASAARVGNY LPMAQGNLNL LASFSGGPGG AGATAATGRP EEESAR |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA02G0333700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK240798 | 0.0 | AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence. | |||
GenBank | AP004776 | 0.0 | AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627477.1 | 1e-168 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 5e-76 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A0E0GF94 | 1e-166 | A0A0E0GF94_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NN88 | 1e-166 | A0A0E0NN88_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1P5T1 | 1e-166 | I1P5T1_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6K7P2 | 1e-166 | Q6K7P2_ORYSJ; Os02g0828566 protein | ||||
STRING | ORUFI02G39810.1 | 1e-167 | (Oryza rufipogon) | ||||
STRING | OS02T0828566-01 | 1e-167 | (Oryza sativa) | ||||
STRING | ONIVA02G40990.1 | 1e-167 | (Oryza nivara) | ||||
STRING | ORGLA02G0333700.1 | 1e-167 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-44 | TCP family protein |