PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA02G0331100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 327aa MW: 34045.6 Da PI: 8.4912 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00054 | 117 | 139 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H ORGLA02G0331100.1 117 YECKTCNKCFPTFQALGGHRASH 139 99**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.56E-8 | 116 | 139 | No hit | No description |
Pfam | PF13912 | 1.9E-11 | 116 | 141 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.094 | 117 | 139 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 117 | 144 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 119 | 139 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.56E-8 | 210 | 237 | No hit | No description |
Pfam | PF13912 | 9.1E-13 | 214 | 238 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.349 | 215 | 237 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.026 | 215 | 237 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 217 | 237 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MSVEDKHAGF VKRKRTKRPR HHAAPASSSE STTTEEEDMA HCLILLAQGA AVVDSKPSTP 60 APPPPPPAQP PVLAAPAPAP PPPQPPVVVV KSERYTSRKY TEAATTADGV RAGFYVYECK 120 TCNKCFPTFQ ALGGHRASHK KPRLPGADDD NVNNVTNTNA IVVKSKPPLT TTTTPSAPSP 180 PPPQADAVVV PDVTTVLSLN NVAAAGSIIN KLRVHECSIC GAEFGSGQAL GGHMRRHRPL 240 HAPPERAATT AATTAATATA PDTKKEGSTG INLELDLNLP APSDEESVSP PPPPPPPVLL 300 ALGGQFNDGK KPILQLTASA ALVGCHY |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA02G0331100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003989 | 0.0 | AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06. | |||
GenBank | AP004026 | 0.0 | AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623775.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | I1P5Q5 | 0.0 | I1P5Q5_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0331100.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04390.1 | 4e-28 | C2H2 family protein |