PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA02G0328500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 197aa MW: 20550.8 Da PI: 4.7134 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + F++ L H+++H ORGLA02G0328500.1 47 YNCTFCRRGFPTAQALGGHMNVH 69 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.66E-6 | 44 | 73 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.8E-4 | 45 | 73 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.471 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.0E-6 | 47 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MSQETSKDEV IGGRSPSGDG DKAEEELREA RSGDDDDDDE AGTRQPYNCT FCRRGFPTAQ 60 ALGGHMNVHR KDRVGRATPS SSSSTTAAAA RRSVSYDTLV GLFRPPASGG SEDAAASTAA 120 GGGGSLRSRT AEPAPQELRL FGRDDGAGRR EEGGGRDRRD RYGCCSKDGD GNGGHDHGEE 180 EELDLELRLG GSGSAGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA02G0328500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624572.1 | 2e-64 | zinc finger protein 11 | ||||
TrEMBL | A0A0D3FC73 | 1e-135 | A0A0D3FC73_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1P5M9 | 1e-135 | I1P5M9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0328500.1 | 1e-135 | (Oryza glaberrima) | ||||
STRING | OBART02G37620.1 | 1e-135 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14547 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 7e-12 | C2H2 family protein |