PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0328500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 197aa    MW: 20550.8 Da    PI: 4.7134
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0328500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000294769123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y C+ C + F++   L  H+++H
  ORGLA02G0328500.1 47 YNCTFCRRGFPTAQALGGHMNVH 69
                       89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.66E-64473No hitNo description
Gene3DG3DSA:3.30.160.603.8E-44573IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.4714774IPR007087Zinc finger, C2H2
PfamPF139124.0E-64771IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSQETSKDEV IGGRSPSGDG DKAEEELREA RSGDDDDDDE AGTRQPYNCT FCRRGFPTAQ  60
ALGGHMNVHR KDRVGRATPS SSSSTTAAAA RRSVSYDTLV GLFRPPASGG SEDAAASTAA  120
GGGGSLRSRT AEPAPQELRL FGRDDGAGRR EEGGGRDRRD RYGCCSKDGD GNGGHDHGEE  180
EELDLELRLG GSGSAGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0328500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624572.12e-64zinc finger protein 11
TrEMBLA0A0D3FC731e-135A0A0D3FC73_9ORYZ; Uncharacterized protein
TrEMBLI1P5M91e-135I1P5M9_ORYGL; Uncharacterized protein
STRINGORGLA02G0328500.11e-135(Oryza glaberrima)
STRINGOBART02G37620.11e-135(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.17e-12C2H2 family protein