PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0320500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 335aa    MW: 36603 Da    PI: 7.4375
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0320500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.13.6e-49101581128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..........lelee......vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 
                        lppGfrF P+deelv++yL++kv +++                     ++ evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nr
  ORGLA02G0320500.1  10 LPPGFRFYPSDEELVCHYLHNKVVNQHrfagvgggaaA---AaaaaggTMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNR 98 
                        79********************9999977666666551...04555557***************87788999******************** PP

                NAM  77 atksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        atksgyWkatgkd+ +++         + + vg++ktLvfy+grap+g+kt+Wvmhe+r+
  ORGLA02G0320500.1  99 ATKSGYWKATGKDRVIHNPklhaaahrRASIVGMRKTLVFYRGRAPNGVKTNWVMHEFRM 158
                        *****************98777776655556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-587177IPR003441NAC domain
PROSITE profilePS5100555.04810177IPR003441NAC domain
PfamPF023651.6E-2711158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVVNQHRFAG VGGGAAAAAA AAGGTMVEVD  60
LHTHEPWELP DVAKLSTNEW YFFSFRDRKY ATGLRTNRAT KSGYWKATGK DRVIHNPKLH  120
AAAHRRASIV GMRKTLVFYR GRAPNGVKTN WVMHEFRMEN PHTPPKEDWV LCRVFYKKKA  180
ETETESSYSM ENEQEAVIAM ARSAAAIKAG GCYSNSSSSH DPAAAGHHSP PPFPASLAAC  240
SSSHHYSSHP PPPPDHHHHH HMPVTGGGGG SLNEFIPTTS MALYSSIFDF SQHLDGGAVA  300
ASASAAGSRV DGGEQCGLME LGLEEHYNYN GLMPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-4711834170NO APICAL MERISTEM PROTEIN
1ut4_B7e-4711834170NO APICAL MERISTEM PROTEIN
1ut7_A7e-4711834170NO APICAL MERISTEM PROTEIN
1ut7_B7e-4711834170NO APICAL MERISTEM PROTEIN
4dul_A7e-4711834170NAC domain-containing protein 19
4dul_B7e-4711834170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0320500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8302500.0CT830250.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121I23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623778.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ9FLJ21e-59NC100_ARATH; NAC domain-containing protein 100
TrEMBLI1P5E90.0I1P5E9_ORYGL; Uncharacterized protein
STRINGORGLA02G0320500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-78NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]