PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0316800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 281aa    MW: 31621 Da    PI: 7.0356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0316800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.7e-1658104455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  ORGLA02G0316800.1  58 VHNLSEKRRRSRINEKMKALQSLIPNS-----SKTDKASMLDDAIEYLKQLQ 104
                        6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-2051115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-2052114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.12754103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-1557108No hitNo description
PfamPF000105.0E-1458104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-1960109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MMDGRGSQEE EHLDLIMRHH ASMGLDRCES EEALGSSESE QPTRPARPRG KRSRAAEVHN  60
LSEKRRRSRI NEKMKALQSL IPNSSKTDKA SMLDDAIEYL KQLQLQVQML SMRNGLYVPP  120
VNLSGAPEHL PIPQMSAALD QNSAKASDPS VVLQPVNQTS GALLPFELAS QHKPLFLPGV  180
PNATALEPRF LVESSRSNLQ SLRFTEPAEM IYPDEMMLKH RLTSANESTI VPGTDEKSVR  240
QNTYMMNADR FDRYALSKDQ LQHIMPKNTE SVLDMPHLQR L
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0316800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-171CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627242.10.0transcription factor SPATULA isoform X1
RefseqXP_015627243.10.0transcription factor SPATULA isoform X1
TrEMBLI1P5B20.0I1P5B2_ORYGL; Uncharacterized protein
STRINGORGLA02G0316800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.17e-35bHLH family protein