PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA02G0311700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARR-B | ||||||||
Protein Properties | Length: 688aa MW: 74368 Da PI: 6.9181 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.1 | 2e-28 | 214 | 267 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl ORGLA02G0311700.1 214 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 267 79*******************.********************************8 PP | |||||||
2 | Response_reg | 76.5 | 9.8e-26 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 vl vdD+p+ +++l+++l + +y +v+++ ++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++ +ge +++l+ + ORGLA02G0311700.1 26 VLAVDDDPVCLKVLETLLLRCQY-HVTTTNQAAIALKMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVLKGI 115 799********************.***************99999********************87754.558******************* PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 Ga d+l Kp+ +eel++ ORGLA02G0311700.1 116 THGACDYLLKPVRIEELRN 134 *****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.0E-209 | 1 | 688 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.5E-40 | 23 | 157 | No hit | No description |
SuperFamily | SSF52172 | 2.85E-34 | 23 | 150 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 3.6E-30 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.416 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.6E-23 | 26 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.63E-26 | 27 | 140 | No hit | No description |
PROSITE profile | PS51294 | 12.56 | 211 | 270 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-30 | 212 | 272 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.14E-20 | 212 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-25 | 214 | 267 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-6 | 216 | 266 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MRAAEERKGV VPAARRRDQF PVGMRVLAVD DDPVCLKVLE TLLLRCQYHV TTTNQAAIAL 60 KMLRENRDMF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSVNGETKT VLKGITHGAC 120 DYLLKPVRIE ELRNIWQHVI RRKFSTRDRA NLDFYEECNK PPNADSDHVH GHVTCGSPDQ 180 SGRPSKKRKE YCSEEEDEGE VNTQDIDDPS APKKPRVVWS VELHRKFVAA VNQLGIDKAV 240 PKRILELMNV EKLTRENVAS HLQKYRLYLK RLSAVASQQV SIVAALGGRD PFLHMGGFEG 300 LQGYQAFTSS AALSSFTPHG LLNSPRNNPA ALGTQGVPAS KSIQTMSGSH TLSHSINDAN 360 KYHLSLPGNQ KGNLGQGLAA SLGQTQMQQK WIHEETDDLS TILSGNGLSN GMSGTLQSVT 420 SSPLLPQELA ECTQAKIVSQ PSIRTSSVSS EHIEGAVGVS SGLLESRVSQ QSTIPLSGFS 480 ANGLLIHGSF NNTCANKLGG TSSSCAPARS SNDLMVARDT KGGASSFGGT MLLPPDTEQK 540 YLNFGGGNGL KQKFDDRTAD SLFDPKFVWS SVPSSQLASN IGAHHAMSQR WNNSSSNSSN 600 IGARMIGQAT SSGSTVIPQM KTDFLVSGDM AMPKNASDLS IPKLQSELSS SSCSFDGLLN 660 SIVKVEKDDV TFSDDLGCGD FYSLGACI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-25 | 210 | 273 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA02G0311700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK099581 | 0.0 | AK099581.1 Oryza sativa Japonica Group cDNA clone:J013040N16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625496.1 | 0.0 | two-component response regulator ORR23 | ||||
Swissprot | B8AEH1 | 0.0 | ORR23_ORYSI; Two-component response regulator ORR23 | ||||
TrEMBL | I1P561 | 0.0 | I1P561_ORYGL; Two-component response regulator | ||||
STRING | ORGLA02G0311700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1856 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-105 | response regulator 12 |