PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0298500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 269aa    MW: 29593.9 Da    PI: 10.8463
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0298500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1041.3e-3296152158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        d p+YVN+KQy++Il+RRq Rakle+++kl  k+rkpylheSRh+hA++R+Rg+gGrF
  ORGLA02G0298500.1  96 DGPIYVNPKQYHGILRRRQLRAKLEAQNKL-VKTRKPYLHESRHRHAMKRARGTGGRF 152
                        57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-3794155IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.73595155IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-2498120IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-2898152IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-24129152IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
XFINLHYIFL LSPGDSFRRT VDGPMRSTLT FDNNHSVVPS QNIDYGQPMA CISYPYNDSG  60
SGVWPSYSSR SVFHPQIVGG GTSPRVPLPS LEIADDGPIY VNPKQYHGIL RRRQLRAKLE  120
AQNKLVKTRK PYLHESRHRH AMKRARGTGG RFLNTKQLQL QQQSHTTSTK TTTDSQNSSG  180
SVHLRLGGGA IGDQTPFPFK AMDSQANIKR AAASASTFTV TSAAQKDDAF FDRHGHHLSS  240
FSGHFVQASA QGGVGSMHNG SQQRVPAMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-2098157463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136145RHRHAMKRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0298500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185740.0AK318574.1 Oryza sativa Japonica Group cDNA, clone: J090045B17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623432.10.0nuclear transcription factor Y subunit A-4
TrEMBLI1P4S90.0I1P4S9_ORYGL; Uncharacterized protein
STRINGORGLA02G0298500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.18e-32nuclear factor Y, subunit A5