PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0293600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 290aa    MW: 31060.2 Da    PI: 10.2988
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0293600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57343.49.6e-1494182397
             DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                        +q+lw + De++lL G   f+a+ g  p   d+ a+++ +++s+s ++ +  +  K++rLK K+ +           + + +h++ + +l+ 
  ORGLA02G0293600.1  94 VQKLWGDADEVALLAGAAAFRARAGHVPRLpDMGALFDSIRGSLSPHIDQAKVYYKLKRLKGKYLHAAPG-------ASAGPHERRVRDLCA 178
                        79************************77766**********************************99888.......678899999999999 PP

             DUF573  94 kiWg 97 
                        ++Wg
  ORGLA02G0293600.1 179 SVWG 182
                        9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.2E-1495182IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MPSKRPSQSA MDAGAAPASP SPPRSSKKRS SRPKPRAGDA ARHPAPNPSP PPXXXXXXXX  60
XXXXXXXXXX XXXXXXXPAA VTAPAAGGQH GGAVQKLWGD ADEVALLAGA AAFRARAGHV  120
PRLPDMGALF DSIRGSLSPH IDQAKVYYKL KRLKGKYLHA APGASAGPHE RRVRDLCASV  180
WGADLEPLAE GDDKRAAAAA ADQPRTVPDA AAMLPVLTEM LDEYWKTDGR ALSSVSLAKG  240
LSLLGTEEAR FIEGKWRRQL DSEIQTQMRR HDLAKEVYAL LMDAIKALGP
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0293600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040800.0AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
GenBankAP0041250.0AP004125.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1767_D02.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626514.11e-138STOREKEEPER protein
TrEMBLI1P4N00.0I1P4N0_ORYGL; Uncharacterized protein
STRINGORGLA02G0293600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763