PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA02G0280100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 211aa MW: 23049.3 Da PI: 11.8415 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 30.4 | 1.3e-09 | 34 | 105 | 17 | 88 |
TCP 17 gRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 R RR a + f+d+qd+LG+ ++sk ieWL+ +a a l + +a + ++s + s+++ + + ORGLA02G0280100.1 34 VRARRTS-TARWYIAFYDIQDRLGVNRPSKSIEWLICAALVARLLLHPPQRRPAPHPrRPSSGRPSEEQARTR 105 5666643.4667789**********************999998888888666663332222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 12.066 | 19 | 78 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.0E-6 | 33 | 71 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEEVVVGKER KRPRCALVGV GGHGSDVADE PGGVRARRTS TARWYIAFYD IQDRLGVNRP 60 SKSIEWLICA ALVARLLLHP PQRRPAPHPR RPSSGRPSEE QARTRKATVV ASPGKLGEKR 120 RKTRSGCAAR KAERIAKLRV WREGWMPRRE ASTSAASGGQ SWIRKPSTPG SGDSCSCSDA 180 KPAKRRWAEK GGEVVAREAG GAERGGGGRR R |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA02G0280100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005733 | 0.0 | AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03. | |||
GenBank | AP005848 | 0.0 | AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | I1P495 | 1e-145 | I1P495_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0280100.1 | 1e-145 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19965 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 6e-08 | TCP family protein |