PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0264700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 387aa    MW: 42488.3 Da    PI: 8.483
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0264700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH542.9e-17190239255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR +iN+++e LrellP+     ++K +Ka+ L +++eYI+ Lq
  ORGLA02G0264700.1 190 RSKHSATEQRRRTKINDRLEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 239
                        889*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-18186248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-22187251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.768188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.92E-16190243No hitNo description
PfamPF000109.1E-15190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MQLFQGEEPA HDFLSLRAGG GSSSPPFQHR EEQHSSHSSR GYGMEIRRSL RPLELAKQRG  60
RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRRSAF  120
AFAPALHGAR MENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGQTPYEA TRAEGRSSAS  180
SADQGPSTPR SKHSATEQRR RTKINDRLEI LRELLPHTDQ KRDKASFLSE VIEYIRFLQE  240
KVQKYEEADP ERNHEDSKSM PWAKVYYRSC WRNTKNTSQV QGEDLSPSTQ DMNNEQYGPK  300
HISAAQPALF NTQSVTSTTT SSSHMATGTP QNLEKNSTPS NQPPWLSMST MRQESEPGNK  360
MPNKHEKQTL HDENHSISSA YSQGSVP
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0264700.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682280.0AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627558.10.0transcription factor BIM2
RefseqXP_015627559.10.0transcription factor BIM2
RefseqXP_015627560.10.0transcription factor BIM2
TrEMBLI1P3U10.0I1P3U1_ORYGL; Uncharacterized protein
STRINGORGLA02G0264700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.32e-29bHLH family protein