PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0262900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 283aa    MW: 32193.4 Da    PI: 9.7972
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0262900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-12107151348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         WT+eEdell ++ k+   ++W ++ar m+ gR++ +c+ rw+ +l
  ORGLA02G0262900.1 107 EWTAEEDELLRRLAKENLFRQWWKVARGMP-GRSGDSCRARWRHHL 151
                        7*****************************.***********9886 PP
2Myb_DNA-binding223.8e-07159202348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        ++T+ +de lv++++  Gg  W++I+r +  gRt    ++rw +++
  ORGLA02G0262900.1 159 PFTARDDEELVRLHRHTGGS-WRKISRSVY-GRTSGIMRDRWIQLR 202
                        79****************88.********9.***999999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.718100155IPR017930Myb domain
SuperFamilySSF466896.5E-20102198IPR009057Homeodomain-like
SMARTSM007172.7E-10104153IPR001005SANT/Myb domain
PfamPF002491.3E-10107150IPR001005SANT/Myb domain
CDDcd001674.29E-10107151No hitNo description
Gene3DG3DSA:1.10.10.605.1E-17107159IPR009057Homeodomain-like
SMARTSM007170.0027156204IPR001005SANT/Myb domain
PROSITE profilePS5129410.507157206IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-9160202IPR009057Homeodomain-like
PfamPF139218.2E-6160203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEEEKEEIAI PAVPVDFFQL MIDGSSKQWR WGRRGESSNR SQWREERLLI EKMSMRKKMQ  60
LGRYPCSRCN QPRSRGGETS MATAAAAAAA AAAKCRCSRR RRLPEREWTA EEDELLRRLA  120
KENLFRQWWK VARGMPGRSG DSCRARWRHH LARDVYHRPF TARDDEELVR LHRHTGGSWR  180
KISRSVYGRT SGIMRDRWIQ LRRSGLVPDA AKTAENAGCP PPAADDSEYM GSEAESKSPP  240
PPPQQQHPLA DVLASSLDSC TLASDATDPR DGILALDFAF MSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A4e-131082205127MYB3
3zqc_D4e-131082205127MYB3
3zqc_G4e-131082205127MYB3
3zqc_J4e-131082205127MYB3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0262900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051130.0AP005113.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0685G12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624539.11e-122transcription factor MYB3R-5
TrEMBLI1P3S30.0I1P3S3_ORYGL; Uncharacterized protein
STRINGORGLA02G0262900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2205166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.15e-22myb domain protein r1