PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0253100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 100aa    MW: 11266.1 Da    PI: 10.0986
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0253100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07451347
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                       +WTt   + + +a + +  +   +W  +ar +g g++  ++k ++ k+
  ORGLA02G0253100.1  4 SWTTKQNKVFERALAIYDRDtpdRWQNVARAVGGGKSVDDVKRHYEKL 51
                       7*****************99*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.8E-6154IPR001005SANT/Myb domain
PROSITE profilePS5129311.481156IPR017884SANT domain
SuperFamilySSF466891.51E-11359IPR009057Homeodomain-like
CDDcd001670.00104452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MSSSWTTKQN KVFERALAIY DRDTPDRWQN VARAVGGGKS VDDVKRHYEK LIKDVDRIDS  60
TGGHQGSHYN SSNASSSSSS SSNSRGSANE DQRRRYHNFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-204601065RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0253100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1213861e-162AK121386.1 Oryza sativa Japonica Group cDNA clone:J023127K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627086.13e-51protein RADIALIS-like 3 isoform X2
RefseqXP_015627089.13e-51protein RADIALIS-like 3 isoform X2
RefseqXP_025878627.13e-51protein RADIALIS-like 3 isoform X2
RefseqXP_025878628.13e-51protein RADIALIS-like 3 isoform X2
RefseqXP_025878629.13e-51protein RADIALIS-like 3 isoform X2
RefseqXP_025878630.13e-51protein RADIALIS-like 3 isoform X2
RefseqXP_025878631.13e-51protein RADIALIS-like 3 isoform X2
SwissprotQ1A1732e-23RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0D3F9G82e-66A0A0D3F9G8_9ORYZ; Uncharacterized protein
STRINGOBART02G29520.13e-67(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.17e-24RAD-like 6