PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA02G0237900.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 303aa MW: 30634.6 Da PI: 7.2343

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0237900.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	28	4.7e-09	38	59	42	63
zf-Dof 42 kGGalrnvPvGggrrknkksss 63 +GG+lrnvPvGgg+rknk+sss ORGLA02G0237900.1 38 EGGSLRNVPVGGGSRKNKRSSS 59 8*****************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-4	38	56	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
FSLIFTLLFF FPLYFYLSPF PLLALISLCP XXXXXXXEGG SLRNVPVGGG SRKNKRSSSS 60 VVPSAAASAS TSAAVSGSVP VGLAAKNPKL MHEGAQDLNL AFPHHRGRAL QPPEFTAFPS 120 LESSSVCNPG GNLAAANGAG GRGSVGAFSA MELLRSTGCY VPLPQMAPLG MPAEYAAAGF 180 HLGEFRMPPP PQQQQQQQAQ TVLGFSLDTH GAGAGGGSGV FGACSAGLQE SAAGRLLFPF 240 EDLKPVVSAA AGDANSGGDH QYDHGKNQGG GGGVIGGHEA PGFWNSSMIG NGSSNGGGGG 300 GSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0237900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028130	0.0	AB028130.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-9.
GenBank	AK120810	0.0	AK120810.1 Oryza sativa Japonica Group cDNA clone:J023014F11, full insert sequence.
GenBank	AK287447	0.0	AK287447.1 Oryza sativa Japonica Group cDNA, clone: J043016O04, full insert sequence.
GenBank	AP005885	0.0	AP005885.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0657H12.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627551.1	1e-112	dof zinc finger protein 2 isoform X2
Swissprot	B9F1L8	1e-113	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	I1P323	0.0	I1P323_ORYGL; Uncharacterized protein
STRING	ORGLA02G0237900.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]