PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0231600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 715aa    MW: 74168.9 Da    PI: 6.3129
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0231600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.61.1e-863577143374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y+ eAL   la+s +++++      t++ +++ +laa+k fs++sP+l+f+
  ORGLA02G0231600.1 357 DELAAAAKATEAGNSVGAREILARLNQQLPPLGKPFLRSASYLREALLLALADSHHGVSS-----VTTPLDVALKLAAYKSFSDLSPVLQFA 443
                        7899*************************************************6666553.....444456889****************** PP

               GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                        ++ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ lg+pfefn+
  ORGLA02G0231600.1 444 NFTATQALLDEIGGTttSCIHVIDFDLGVGGQWASFLQELAHRRaaggVTLPLLKLTAFVSTASHHPLELHLTQDNLSQFAADLGIPFEFNA 535
                        *************998899**********************99976544599**************************************** PP

               GRAS 181 lvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                        +   +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+lsPk+vv +++ ad+ + sF ++fl++++ ++ l+dsl
  ORGLA02G0231600.1 536 V---SLDAFNPGELISSTgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLSPKIVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSL 617
                        8...9*********888889********9777665...44....556********************************************* PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        +a  + +++ + k+Er+l+++++ ++v  +++       ++  Wr+ + +aGFkpvp s+ a++qa++ll++v+++g++ve++ ++l+l+W+
  ORGLA02G0231600.1 618 DAA-GIDADSACKIERFLIQPRVHDMVLGRHKV-----HKAIAWRSVFAAAGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQ 703
                        888.7899*******************988876.....56889************************************************* PP

               GRAS 364 drpLvsvSaWr 374
                        + +Lvs+S+Wr
  ORGLA02G0231600.1 704 RGELVSISSWR 714
                        **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.512329694IPR005202Transcription factor GRAS
PfamPF035143.9E-84357714IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MRAALFGAER SGVVDLGGIG GGNRGLFWPA GKGGLVVVEP RSVLDCTRSP SPRNSTSTLS  60
SSQGGGGADS TGVAAVSESS AAAAEATKWG APGEHGGGGG GGGGGGKEDW SSGCELPPIP  120
GTLDVGLVGG EGWDTMLGNA AAAAAGQDQS FLNWIIGAAG DLEQPGPPLL DNAGFGIPAV  180
DPLGFSLDHS LSGVASDLSS SGAHTATGGA GGGKASLGFG LFSPEATSLE QPPPPMLFHE  240
GIDTKPPLLG AQPPGLLNHY HHQPPNPAAT FFMPHPSFPE HNHQSPLLQP PPKRHHSMPD  300
DIYLARNQLP PAAAAAQGLP FSPLHASVPL QLQPSPPPTR GAMKTTAAEA AQQQLLDELA  360
AAAKATEAGN SVGAREILAR LNQQLPPLGK PFLRSASYLR EALLLALADS HHGVSSVTTP  420
LDVALKLAAY KSFSDLSPVL QFANFTATQA LLDEIGGTTT SCIHVIDFDL GVGGQWASFL  480
QELAHRRAAG GVTLPLLKLT AFVSTASHHP LELHLTQDNL SQFAADLGIP FEFNAVSLDA  540
FNPGELISST GDEVVAVSLP VGCSARAPPL PAILRLVKQL SPKIVVAIDH GADRADLSFS  600
QHFLNCFQSC VFLLDSLDAA GIDADSACKI ERFLIQPRVH DMVLGRHKVH KAIAWRSVFA  660
AAGFKPVPPS NLAEAQADCL LKRVQVRGFH VEKRGAALTL YWQRGELVSI SSWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2543071480375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0231600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627071.10.0scarecrow-like protein 6
TrEMBLI1P2W00.0I1P2W0_ORYGL; Uncharacterized protein
STRINGORGLA02G0231600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.18e-93GRAS family protein