PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA02G0229600.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 343aa MW: 35468.4 Da PI: 5.4072

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0229600.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.3e-05	6	26	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C ++F ++ L H+r+H ORGLA02G0229600.1 6 CKLCYRRFASPRALAGHMRSH 26 ********************9 PP
2	zf-C2H2	11.4	0.00099	200	222	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F++ L H +H ORGLA02G0229600.1 200 FQCPACKKVFRSYQALGGHRASH 222 89**********99999998887 PP
3	zf-C2H2	10.9	0.0014	264	286	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F + L H ++H ORGLA02G0229600.1 264 HECPYCYRVFASGQALGGHKKSH 286 79************999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.14	4	26	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.141	4	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.63E-7	5	26	No hit	No description
Pfam	PF13912	1.2E-4	6	26	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.63E-7	195	222	No hit	No description
Pfam	PF13912	8.6E-11	199	222	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.026	200	222	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.286	200	222	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	202	222	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.912	264	286	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.39	264	286	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.0E-11	264	286	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	266	286	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MAKNACKLCY RRFASPRALA GHMRSHSVAA ANAAAAAAAA AAAKLQISSA SSASTSFTAA 60 DEEEEEEEEE EEDVGFKKPL SIYALRENPK RSLRVSEYAF SDRESEAEST PTPAAKGLRA 120 GGGGGGGGDG EPMSSLSYAG TPEEEVALAL MMLSRDTWPS VERGGGGGEY SDDGSDDGYA 180 LPPPSPAPAP APVPEKRTRF QCPACKKVFR SYQALGGHRA SHVRGGRGGC CAPPVAPPPQ 240 PHPQPPLLEH DAGEEDMDGK APPHECPYCY RVFASGQALG GHKKSHVCSA AAAAAHAQTP 300 GGGAPPPQPK ILGMIDLNFA PPVDEVELSA VSDPHFPSNP PGP

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MAKNACKLCY RRFASPRALA GHMRSHSVAA ANAAAAAAAA AAAKLQISSA SSASTSFTAA  60
DEEEEEEEEE EEDVGFKKPL SIYALRENPK RSLRVSEYAF SDRESEAEST PTPAAKGLRA  120
GGGGGGGGDG EPMSSLSYAG TPEEEVALAL MMLSRDTWPS VERGGGGGEY SDDGSDDGYA  180
LPPPSPAPAP APVPEKRTRF QCPACKKVFR SYQALGGHRA SHVRGGRGGC CAPPVAPPPQ  240
PHPQPPLLEH DAGEEDMDGK APPHECPYCY RVFASGQALG GHKKSHVCSA AAAAAHAQTP  300
GGGAPPPQPK ILGMIDLNFA PPVDEVELSA VSDPHFPSNP PGP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0229600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005072	0.0	AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624884.1	1e-164	zinc finger protein ZAT1
TrEMBL	I1P2U0	0.0	I1P2U0_ORYGL; Uncharacterized protein
STRING	ORGLA02G0229600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	1e-22	C2H2-like zinc finger protein