PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0229500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 619aa    MW: 65680.5 Da    PI: 6.3264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0229500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-05119136219
                        EETTTTEEESSHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                        +C++Cgk F+++ +L  H
  ORGLA02G0229500.1 119 TCENCGKEFTSWKTLLDH 136
                        6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.8E-53659IPR007087Zinc finger, C2H2
SuperFamilySSF576673.92E-63759No hitNo description
PROSITE profilePS501578.7043759IPR007087Zinc finger, C2H2
SMARTSM003555.23759IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
SuperFamilySSF576673.92E-6113138No hitNo description
PROSITE profilePS501578.621118145IPR007087Zinc finger, C2H2
SMARTSM00355200118138IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.96E-8295318No hitNo description
PROSITE profilePS5015710.221296323IPR007087Zinc finger, C2H2
SMARTSM003550.13296318IPR015880Zinc finger, C2H2-like
PfamPF139125.0E-9296320IPR007087Zinc finger, C2H2
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
SuperFamilySSF576677.96E-8427454No hitNo description
PfamPF139121.9E-12431455IPR007087Zinc finger, C2H2
SMARTSM003550.46432454IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349432454IPR007087Zinc finger, C2H2
PROSITE patternPS000280434454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MAMVVAGSHR PPPPPQSLRL VPPPPPQPPP PPLTYRHHCK VCKKGFMCGR ALGGHMRAHG  60
IGDDNDTMDD DDGRDDDHSL SPCDGGGEPS EAAGSPTTTT TKRMYALRTN PGRPRNCRTC  120
ENCGKEFTSW KTLLDHGRCG LDEEDGRLDV SLRSPPLHDG GDENDGEDEE EGDDLTLAAG  180
GWSKGKRSRR AKVMAVGTGS VSELQLPAPS TEEEDLANFL VMLSSSSSSS LRVAQPAIVV  240
DDADQESCAS GSKDEERNRF LVPQPISMAA PMMAQMTVIA PQVVPQHIST VPRGMFECKA  300
CKKVFTSHQA LGGHRASHKK VKGCFAAKLE SSRNETSQTQ TQQQHVSAAP HDNTRATTSH  360
VITSDISMDA NTIGASADAD GKAAASGVGA GEIVLAGASS TDMAMMMSVE DFAPTPLAPS  420
AVSPFKKKGK VHECSICHRV FTSGQALGGH KRCHWLTSGA TDPLTKLQPV AQDHAMMAAM  480
CHQLTLGRPI FDPTDQRILD LNVPTNPLAE AVAARQQQQQ QVAALNDGAL CLNAAASVYL  540
QSWTGHSNGS HVNKTTATSS RINDAAGGVT TEDDEADSTS AKRAKIGDLK DMKVAGESLP  600
WLQVGIGISS ESKEKNTQE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0229500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075590.0AK107559.1 Oryza sativa Japonica Group cDNA clone:002-130-B07, full insert sequence.
GenBankAP0050720.0AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBankAP0052890.0AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624902.10.0uncharacterized protein LOC4330215
TrEMBLI1P2T90.0I1P2T9_ORYGL; Uncharacterized protein
STRINGORGLA02G0229500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.13e-12C2H2-like zinc finger protein