PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0221200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 388aa    MW: 40848.2 Da    PI: 8.495
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0221200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19307341135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  ORGLA02G0221200.1 307 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 341
                        *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-6940380IPR016679Transcription factor, GATA, plant
SMARTSM004017.4E-18301355IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.308301337IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-14301362No hitNo description
Gene3DG3DSA:3.30.50.101.7E-15305339IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.57E-14306348No hitNo description
PfamPF003202.6E-17307341IPR000679Zinc finger, GATA-type
PROSITE patternPS003440307332IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSSFAHHHHG SLVEKDGRMS ALRSSLRPYE AAEEMAAAAA AGGPAAAWGA VERGAGMMGD  60
GFSVEDLLDL EELCEVDRDG GEQGEAAAAA AAAVEKERSS DSHGSSVVSY EPMPLLPPVM  120
DLPAHDVEEL EWVSRIMDDS LAELPLPQLP AAAAALAACG KPQHRRPHEG AASALLDPMR  180
TPTICALSTE ALVPVKSRRS KRSRASVWSL SGAPLSDSTS SSSTATTSSC SSSASFSPFL  240
QYVDFPALVA SDLLDEQPRS KKSKHGKNGK QKPKKRGRKP KHQQPPHLAA AAAAGGAALP  300
ATGDRRCSHC GVQKTPQWRA GPEGAKTLCN ACGVRYKSGR LLPEYRPACS PTFVSSLHSN  360
SHRKVLEMRR KKETPVIVAA AAPAVASF
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0221200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094770.0AK109477.1 Oryza sativa Japonica Group cDNA clone:001-200-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623357.10.0GATA transcription factor 6
TrEMBLI1P2K60.0I1P2K6_ORYGL; GATA transcription factor
STRINGORGLA02G0221200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-39GATA transcription factor 5