PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0213000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 266aa    MW: 28644.9 Da    PI: 8.8866
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0213000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.91.7e-312611054128
                NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev  +          ++++vg++ktLvfy+grap+g+kt Wvmhe+rl
  ORGLA02G0213000.1  26 TASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRGSssssssssssSRAVVGMRKTLVFYQGRAPNGVKTGWVMHEFRL 110
                        567************************************99866665555544444***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.8811138IPR003441NAC domain
PfamPF023651.0E-1517110IPR003441NAC domain
SuperFamilySSF1019413.27E-3624138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRVFVLSKFI VVVICAYTNA EVAKLTASEW YFFSFRDRKY ATGSRTNRAT KTGYWKATGK  60
DREVRGSSSS SSSSSSSSRA VVGMRKTLVF YQGRAPNGVK TGWVMHEFRL DSPHSQPRCV  120
CLSCVLQEDW VLCRVFQKRK GDGDGPQDSG GAASPTFTGS MSTTTLSQLQ PPDHRRHAAA  180
AAGGYYVGSQ QLAAGYDSAA GFANPTQPAV PHYQYGGAVI GFPEEFGGGG GVADEYGFGT  240
YLDLGFELDD TASVLGGIRS FPQGWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-28113942169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0213000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1051220.0AK105122.1 Oryza sativa Japonica Group cDNA clone:001-101-C03, full insert sequence.
GenBankAP0068470.0AP006847.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, fosmid clone:OSJNOa148N02.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624505.11e-153NAC domain-containing protein 92
TrEMBLI1P2C40.0I1P2C4_ORYGL; Uncharacterized protein
STRINGORGLA02G0213000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.19e-45NAC domain containing protein 74