PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA02G0207800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 705aa MW: 73622.4 Da PI: 6.8005 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.2 | 1.3e-10 | 302 | 358 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g ORGLA02G0207800.1 302 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 358 57*******************5444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 49.7 | 9.1e-16 | 401 | 452 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g ORGLA02G0207800.1 401 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 452 89****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.4E-14 | 302 | 368 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-8 | 302 | 358 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.11E-16 | 302 | 368 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.7E-11 | 303 | 367 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-22 | 303 | 372 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.108 | 303 | 366 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 304 | 315 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.74E-23 | 401 | 462 | No hit | No description |
Pfam | PF00847 | 3.2E-10 | 401 | 452 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-18 | 401 | 462 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-18 | 402 | 461 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-34 | 402 | 466 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.467 | 402 | 460 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 442 | 462 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 705 aa Download sequence Send to blast |
MASANNWLGF SLSGQENPQP HQDNSPPAAI DISGAGDFYG LPTSQPTAAD AHLGVAGHHH 60 NASYGIMEAF NRGAQEAQDW NMRGLDYNGG ASELSMLVGS SGGKRAAAVE ETEPKLEDFL 120 GGNSFVSEQD HHAAGGFLFS GVPMASSTNS NSGSNTMELS MIKTWLRNNG QVPAGHQPQQ 180 QQPAAAAAAA QQQAHEAAEM STDASASSFG CSSDAMGRSN NGGAVSAAAG GTSSQSLALS 240 MSTGSHSHLP IVVAGGGNAN GGAAESTSSE NKRASGAMDS PGGGAIEAVP RKSIDTFGQR 300 TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQGGYD KEDKAARAYD LAALKYWGTT 360 TTTNFPISNY EKELDEMKHM TRQEYIAYLR RNSSGFSRGA SKYRGVTRHH QHGRWQARIG 420 RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL ESSTLPVGGA 480 ARRLKEAADH AEAAGATIWR AADMDGAGVI SGLADVGMGA YAASYHHHHH HHGWPTIAFQ 540 QPPPLAVHYP YGQAPAAPSR GWCKPEQDAA VAAAAHSLQD LQQLHLGSAA AAAHNFFQAS 600 SSSTVYNGGG GGYQGLGGNA FLMPASTVVA DQGHSSTATN QGSTCSYGNE EQAGKLIGYD 660 AMAMASGAAG GGYQLSQGSA STVSIARANG GYSANWSSPF NGAMG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA02G0207800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK112070 | 0.0 | AK112070.1 Oryza sativa Japonica Group cDNA clone:001-120-D07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623974.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | I1P272 | 0.0 | I1P272_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0207800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-121 | AP2 family protein |