PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0204800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 273aa    MW: 29032.3 Da    PI: 4.9557
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0204800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-071054341
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  ORGLA02G0204800.1 10 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 54
                       679*****************************6688888898877 PP

2CCT70.83.3e-24202245144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k++
  ORGLA02G0204800.1 202 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRT 245
                        9****************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.424855IPR000315B-box-type zinc finger
SMARTSM003362.9E-14855IPR000315B-box-type zinc finger
PfamPF006435.8E-61055IPR000315B-box-type zinc finger
PfamPF062032.0E-18202244IPR010402CCT domain
PROSITE profilePS5101716.916202244IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
HGAGSRHARV WLCEVCEHAP AAVTCRADAA ALCAACDADI HSANPLARRH ERLPVAPFFG  60
PLADAPQPFP FSQAAADAAA AREEDADDDR SNEAEAASWL LPEPDDNSHE DSAAAADAFF  120
ADTGAYLGVD LDFARSMDGI KAIGVPVAPP ELDLTAGSLF YPEHSMAHSL SSSEVAIVPD  180
ALSAGAAAPP MVVVVASKGK EREARLMRYR EKRKNRRFDK TIRYASRKAY AETRPRIKGR  240
FAKRTADADD DDEAPCSPAF SALAASDGVV PSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0204800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0585360.0AK058536.1 Oryza sativa Japonica Group cDNA clone:001-017-B01, full insert sequence.
GenBankAK1000970.0AK100097.1 Oryza sativa Japonica Group cDNA clone:J023004D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625855.10.0zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A0E0G9Q60.0A0A0E0G9Q6_ORYNI; Uncharacterized protein
TrEMBLI1P2420.0I1P242_ORYGL; Uncharacterized protein
STRINGONIVA02G26540.10.0(Oryza nivara)
STRINGORGLA02G0204800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.12e-34CONSTANS-like 3