PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA02G0204800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 273aa MW: 29032.3 Da PI: 4.9557 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.3 | 1.3e-07 | 10 | 54 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p ORGLA02G0204800.1 10 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 54 679*****************************6688888898877 PP | |||||||
2 | CCT | 70.8 | 3.3e-24 | 202 | 245 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k++ ORGLA02G0204800.1 202 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRT 245 9****************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.424 | 8 | 55 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.9E-14 | 8 | 55 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.8E-6 | 10 | 55 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.0E-18 | 202 | 244 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.916 | 202 | 244 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence Send to blast |
HGAGSRHARV WLCEVCEHAP AAVTCRADAA ALCAACDADI HSANPLARRH ERLPVAPFFG 60 PLADAPQPFP FSQAAADAAA AREEDADDDR SNEAEAASWL LPEPDDNSHE DSAAAADAFF 120 ADTGAYLGVD LDFARSMDGI KAIGVPVAPP ELDLTAGSLF YPEHSMAHSL SSSEVAIVPD 180 ALSAGAAAPP MVVVVASKGK EREARLMRYR EKRKNRRFDK TIRYASRKAY AETRPRIKGR 240 FAKRTADADD DDEAPCSPAF SALAASDGVV PSF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA02G0204800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK058536 | 0.0 | AK058536.1 Oryza sativa Japonica Group cDNA clone:001-017-B01, full insert sequence. | |||
GenBank | AK100097 | 0.0 | AK100097.1 Oryza sativa Japonica Group cDNA clone:J023004D12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625855.1 | 0.0 | zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | A0A0E0G9Q6 | 0.0 | A0A0E0G9Q6_ORYNI; Uncharacterized protein | ||||
TrEMBL | I1P242 | 0.0 | I1P242_ORYGL; Uncharacterized protein | ||||
STRING | ONIVA02G26540.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA02G0204800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24790.1 | 2e-34 | CONSTANS-like 3 |