PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA02G0184700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 381aa MW: 40250.4 Da PI: 7.0355 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.4 | 6.4e-07 | 171 | 192 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H ORGLA02G0184700.1 171 FCDICGKGFRRDANLRMHMRAH 192 6*******************99 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00022 | 256 | 280 | 1 | 23 |
EEETTTT..EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg..ksFsrksnLkrHirtH 23 y C+ Cg k+F +L++Hir + ORGLA02G0184700.1 256 YACERCGgkKRFAVLADLRSHIRHC 280 89*********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.24E-6 | 167 | 192 | No hit | No description |
PROSITE profile | PS50157 | 11.614 | 170 | 192 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0019 | 170 | 192 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.4E-6 | 172 | 192 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 172 | 192 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 73 | 218 | 251 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 16 | 256 | 279 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MKSTTHLLAG GGSVAPPTAA TAPTLAMEVG DPSGALVGGA GGAGAGGGDG DARDALLRLV 60 ALGDRMAAVR RRIAASISGE SGPLSSSDIH SVSSEISSAA HLVVLNAASL LSSTVASLPA 120 PPPPPATTVQ ELPPVVVSVP QEPPQEAAKG DGDYDVVELD ASELLAEHVH FCDICGKGFR 180 RDANLRMHMR AHGDRFKTLD ALSRPGQPKP PAGREVRFSC PYAGCNRNRA HRRFRPLKSA 240 VCARNHFRRS HCPKLYACER CGGKKRFAVL ADLRSHIRHC GEEAQWRCSC GTTFSRKDKL 300 FGHLALFEGH TPAIAEPNKG VATAAAEASI SMMEEGGVEA NCDREEDEEG GFDPKFFQEW 360 MEELRGGAVA PNWSVPSEAG H |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA02G0184700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005699 | 0.0 | AP005699.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627485.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | I1P1J1 | 0.0 | I1P1J1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0184700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12550 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 3e-70 | C2H2 family protein |