PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0176700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 662aa    MW: 73603.8 Da    PI: 6.3858
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0176700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.6e-23112212198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++aee+       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   
  ORGLA02G0176700.1 112 FCKTLTASDTSTHGGFSVLRRHAEEClppldmtQNPPWQ--ELVARDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL-- 199
                        99****************************986555545..8************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        + +++el+v+v+r
  ORGLA02G0176700.1 200 RGENGELRVGVRR 212
                        449999*****97 PP
2Auxin_resp111.48.7e-37238320183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha+st++ F+v+Y+Pr+s+seFvv+++k+++a ++k+svGmRfkm+fe+++++err+sGt++gv  ++++ W nS WrsLk
  ORGLA02G0176700.1 238 ASHAISTGTLFSVFYKPRTSQSEFVVSANKYLEAKNSKISVGMRFKMRFEGDEAPERRFSGTIIGVGSMSTSPWANSDWRSLK 320
                        789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-44101241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-41107227IPR015300DNA-binding pseudobarrel domain
CDDcd100177.31E-22110212No hitNo description
SMARTSM010191.5E-22112214IPR003340B3 DNA binding domain
PROSITE profilePS5086311.462112214IPR003340B3 DNA binding domain
PfamPF023625.2E-21112212IPR003340B3 DNA binding domain
PfamPF065071.8E-34238320IPR010525Auxin response factor
PfamPF023095.0E-13519623IPR033389AUX/IAA domain
PROSITE profilePS5174525.456532625IPR000270PB1 domain
SuperFamilySSF542776.41E-12534611No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
GSSCDALYRE LWHACAGPLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ HLPLFNLPSK  60
ILCKVVNVEL RAETDSDEVY AQIMLQPEAD QNELTSPKPE PHEPEKCNVH SFCKTLTASD  120
TSTHGGFSVL RRHAEECLPP LDMTQNPPWQ ELVARDLHGN EWHFRHIFRG QPRRHLLTTG  180
WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHSM HLGVLATASH  240
AISTGTLFSV FYKPRTSQSE FVVSANKYLE AKNSKISVGM RFKMRFEGDE APERRFSGTI  300
IGVGSMSTSP WANSDWRSLK VQWDEPSVVP RPDRVSPWEL EPLAVSNSQP SPQPPARNKR  360
ARPPASNSIA PELPPVFGLW KSSAESTQGF SFSGLQRTQE LYPSSPNPIF STSLNVGFST  420
KNEPSALSNK HFYWPMRETR ADSYSASISK VPSEKKQEPS SAGCRLFGIE ISSAVEATSP  480
LAAVSGVGQD QPAASVDAES DQLSQPSHAN KSDAPAASSE PSPHETQSRQ VRSCTKVIMQ  540
GMAVGRAVDL TRLHGYDDLR CKLEEMFDIQ GELSASLKKW KVVYTDDEDD MMLVGDDPWP  600
EFCSMVKRIY IYTYEEAKQL TPKSKLPIIG DAIKPNRNKQ SPESDMPHSD LDSTAPVTDK  660
DC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.0134313355Auxin response factor 1
4ldw_A0.0134313355Auxin response factor 1
4ldw_B0.0134313355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0176700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0700260.0AK070026.1 Oryza sativa Japonica Group cDNA clone:J023036G16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625501.10.0auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLI1P1B10.0I1P1B1_ORYGL; Auxin response factor
STRINGORGLA02G0176700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]