PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0172900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 684aa    MW: 72374.7 Da    PI: 9.9596
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0172900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.7e-08187231244
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                        ++W+ eEd  l  +v+++G g+W  I ++      Rt  q++ rw
  ORGLA02G0172900.1 187 KPWSREEDMELGAGVQKHGEGNWMEILHKYKfdSSRTHLQLQQRW 231
                        68******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.555181239IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-11181238IPR009057Homeodomain-like
SMARTSM007172.4E-6185237IPR001005SANT/Myb domain
PfamPF002493.3E-6187231IPR001005SANT/Myb domain
SuperFamilySSF466896.43E-13188247IPR009057Homeodomain-like
CDDcd116606.60E-18189236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
SEDDAYLILH RYQPATILTM LQEMGKQVGA GKGIDWRALV RRTSTGITSA REYQMLWRHL  60
AYGHEFVESV EPASLPLDDG SDLECEIEIV PAPGNEALAE ATSFAKTIIT GSSREQTSGQ  120
RVNSEAAALN TPNEKIVRVP SDKQLVPGHR LTNGTGPVSS SKQPSHTGSS PDPLDPNGHP  180
KKKKKPKPWS REEDMELGAG VQKHGEGNWM EILHKYKFDS SRTHLQLQQR WALICKRQGS  240
TKPATPKIPN VMSEELKAAQ KAFSLAIGTT RSSTLRPGGV PHHNPMVTTM TPEVKSVTAP  300
SPLPVPVHVV PVPVPVQPVQ VQLPPPQLHQ APAQSAPPPP KVSNASNKSR NNSKKQVAQS  360
IPVNGPLSIQ EAALAAGGRI AEPSVATNFL KAAQSTKAVH IRSRGTGSSK SSTGSKTPTV  420
AGEPGTQLGS DQHLELQSTG GPSQVLTAHA TEQVHNVSEV AGVNPLGQSA GVHLSETKKA  480
LNTTPVSGSS DKMEIDDNSN YFAVTMEDLF PEDVKQEDVQ DPKIEEAIDP KDADMLEFDR  540
FVAQGCLNKD NVDKSKAAKI APEAQSVIGS QKKQLKTLPT VGKSNPVFAG PPATAKKTKA  600
PIPQGGMSSG IVGVLNRSLG GKAPAPATTG TQSTVQKQQS MSSKGNLLVP KNVAPGTVTP  660
ANNRANTAVN GASKVNPPAS QKPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185PKKKKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0172900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0684480.0AK068448.1 Oryza sativa Japonica Group cDNA clone:J013152C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627404.10.0uncharacterized protein LOC4329631
TrEMBLI1P1730.0I1P173_ORYGL; Uncharacterized protein
STRINGORGLA02G0172900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.14e-37MYB_related family protein