PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0157900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 492aa    MW: 54531 Da    PI: 7.4566
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0157900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-056688123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y C+ C+k F r  nL+ H r H
  ORGLA02G0157900.1 66 YICEVCHKGFQRDQNLQLHRRGH 88
                       89*******************88 PP
2zf-C2H210.90.0014142164123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC  C+k +  +s+ k H + +
  ORGLA02G0157900.1 142 WKCDRCSKKYAVQSDWKAHTKIC 164
                        58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-66588No hitNo description
SMARTSM003550.0386688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7416688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035552107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-6137162No hitNo description
SMARTSM00355230142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MSHTSEEESL NNLQQQPKLE ACAAGSSKGD TVMPVVKKRR GHPGNPDPDV EVVALSPKTL  60
LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKKVYVCP EITCPHHDAT  120
RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK  180
DSFITHRAFC DALAEDTSRV NHSLATMVGS LHGQQQDMFS HGVPSFSSSP TDMIANLASN  240
DHNSDSHLRS LSPYALVTRN TALFSNQISP KESGFPLDGR VTSYPYMSMN SPYMSATALL  300
QKAAEMGAKT SQDPISPLLL KSFPNNLTSS RDHMNISSRS QGDSLGNSTV NSDCMKTTED  360
ENSYMIGRGN ILINAPWSSG IMRPGTVPLI GLMNHPFSMR EEKDNPSIFP ENQTQHNRQD  420
NISGVVDADA GLTQDFLGLG GSGTLDMSSE TYNADVTALS YSDEQEKPQE HIYSYHQSSL  480
DPTALEKPIW DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-33138201366Zinc finger protein JACKDAW
5b3h_F8e-33138201366Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0157900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879352.10.0protein indeterminate-domain 2-like
TrEMBLA0A0D3F5P90.0A0A0D3F5P9_9ORYZ; Uncharacterized protein
TrEMBLI1P0S30.0I1P0S3_ORYGL; Uncharacterized protein
STRINGORGLA02G0157900.10.0(Oryza glaberrima)
STRINGOBART02G18320.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2