PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0135000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 272aa    MW: 29836.3 Da    PI: 7.8192
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0135000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-1529132198
                        EEEE-..-HHHHT.T-EE--HHH.HTT......---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlks.grlvlpkkfaeeh......ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f k+l+psdv+    +lv+p +++ +       + ++ + + +++ed   +g+ W +++  +k+++ + ltkGW  +++++gL++gD+v F 
  ORGLA02G0135000.1  29 FGKALMPSDVSWDtEQLVIPDEHVGKLldmvvmNRPEGGFFVVVVEDgeVTGKLWLFRY--WKRDDVHCLTKGWGCYAREKGLRAGDTVSFF 118
                        66999*****977699********9999999976666667777888866677*******..******************************9 PP

                        E-SSSEE..EEEEE- CS
                 B3  84 ldgrsefelvvkvfr 98 
                        ++   ++++++  +r
  ORGLA02G0135000.1 119 HST-ACGRFFICCRR 132
                        765.55555666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-1723134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-1727132IPR015300DNA-binding pseudobarrel domain
CDDcd100176.59E-1828132No hitNo description
PfamPF023622.4E-1129132IPR003340B3 DNA binding domain
SMARTSM010190.002329133IPR003340B3 DNA binding domain
PROSITE profilePS508639.4630134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KALMPSDVSW DTEQLVIPDE HVGKLLDMVV  60
MNRPEGGFFV VVVEDGEVTG KLWLFRYWKR DDVHCLTKGW GCYAREKGLR AGDTVSFFHS  120
TACGRFFICC RRTCMSFLSL PTTSHRIHGS SVLPQPRAAQ AAHHPFSGHA TLCLGNKASD  180
HSAPARHATA SLGCAAAQPP QVPPTPTPRR RRRSMMVHPE PPEHTTDGMP VILESMALVS  240
TPPVAKRVRL FGVYIDVPPL RPGGEATQDF NP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-132812213105DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0135000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056080.0AP005608.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07.
GenBankAP0056960.0AP005696.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624416.10.0putative B3 domain-containing protein Os02g0455900
SwissprotQ6K3B10.0Y2559_ORYSJ; Putative B3 domain-containing protein Os02g0455900
TrEMBLI1P0440.0I1P044_ORYGL; Uncharacterized protein
STRINGORGLA02G0135000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181381010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.12e-13B3 family protein