PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0134900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 267aa    MW: 29359.8 Da    PI: 8.5858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0134900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.2e-1629124193
                        EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                 B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                        f+k l+psd  ++  +l +p ++++++g        ++led++g             + W +++  +k+ g + ltkGW+ Fv+++gLk+gD
  ORGLA02G0134900.1  29 FEKFLMPSDLCSNtEWLGIPEEHVRKFG--------MMLEDRDGysviffqdgvvpgKLWCFRY--WKSNGVHGLTKGWRCFVREKGLKAGD 110
                        89*******9988799********9997........888888888888888889999*******..************************** PP

                        EEEEEE-SSSEE..E CS
                 B3  79 fvvFkldgrsefelv 93 
                        ++ F + g+ +++l+
  ORGLA02G0134900.1 111 TISFFR-GSACGHLF 124
                        ***984.33555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-1924138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-1927126IPR015300DNA-binding pseudobarrel domain
CDDcd100178.73E-1928128No hitNo description
SMARTSM010191.8E-729130IPR003340B3 DNA binding domain
PfamPF023623.9E-1329126IPR003340B3 DNA binding domain
PROSITE profilePS5086310.54630131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAASLPLSAA IVGAEESVDK EVLEMEYLFE KFLMPSDLCS NTEWLGIPEE HVRKFGMMLE  60
DRDGYSVIFF QDGVVPGKLW CFRYWKSNGV HGLTKGWRCF VREKGLKAGD TISFFRGSAC  120
GHLFICCRLG TRATFASSST LHHGFSMPPP PARPLVGLES GMLARHVPSL GQARLHDGNQ  180
DGSGAPSRHV PSSGRRVEAQ LSRVSSRRQR CTMKHSIPEP TIETPPILES MFLIAAPPAV  240
KCLRLFGVNI YVLPVSSSGQ PKQESSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0134900.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625111.10.0B3 domain-containing protein Os02g0455800
SwissprotQ6K3B20.0Y2558_ORYSJ; B3 domain-containing protein Os02g0455800
TrEMBLI1P0430.0I1P043_ORYGL; Uncharacterized protein
STRINGORGLA02G0134900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-18B3 family protein