PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0112700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 567aa    MW: 61213.5 Da    PI: 4.4639
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0112700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.89.5e-15101531128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknra.....tk...sgyW 83 
                        l pGf+F+P+ e+l++++L + +++++l ++ v+   d  ++ Pw L  ++ +++e+e yf  +      +g r++++     t     g W
  ORGLA02G0112700.1  10 LSPGFKFNPSVEQLLCFFLLPYLQHRRLLVDGVVFLDDPASAPPWALLhRHGRGGEDEAYFIGPVPAGDGHGGRRQQQvsrtvTGgggGGKW 101
                        579************************9998888888**********834555677799***99999888765555432444422555899* PP

                NAM  84 katgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ ++++  ++       +++  +   +L f+  ++ ++ +t Wvmhe+++
  ORGLA02G0112700.1 102 IKQRTERPRGEEepvvvfgGETFRWEEFSLNFHADERCRSGSTGWVMHEFAV 153
                        99988888777655555544444888899****99999999*********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-283173IPR003441NAC domain
PROSITE profilePS5100523.23310173IPR003441NAC domain
PfamPF023658.9E-1012152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MATAAESQGL SPGFKFNPSV EQLLCFFLLP YLQHRRLLVD GVVFLDDPAS APPWALLHRH  60
GRGGEDEAYF IGPVPAGDGH GGRRQQQVSR TVTGGGGGGK WIKQRTERPR GEEEPVVVFG  120
GETFRWEEFS LNFHADERCR SGSTGWVMHE FAVVPPAGSR VAATHTACRI AFTGHGQKRK  180
RVPDGYVFVD VHVQTAAAAA AAVAPPLPML SSYGEPPHEH FSDDHPPPHS YTYYTQEYQQ  240
FLPAAEQSDQ EQEYCAPEQQ NFQDYHVAAA EQTDQDYFYT EMINQEQDYA YQQQDYAYQQ  300
QQQHLFHGDF LATSQQFLGQ DHEVMVTGLG GGLVVSDNGE HASAAAPATE PPVHDVFLET  360
LVPEPPENAY VDGAGESAMA SASSAGGAPL LEQPFATPPQ QFLDQEPAPA GLNDGGGMIY  420
NNNGDGEHDA APAAQPPARY YSGPVPAVDS VFLDKMREYL MADAKGLCRI DAPINNGEHA  480
AAPAPAADDP LAAQHGHGDA PPLPVPPDAA ELERVVGHLL REVEDIIKVA AAGGYGGSSD  540
KPLSEFDKAQ NQILAKLMAV FNQVAES
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0112700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1NZH10.0I1NZH1_ORYGL; Uncharacterized protein
STRINGORGLA02G0112700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123