PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA02G0112600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 501aa MW: 56492.4 Da PI: 3.8774 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50.5 | 6.8e-16 | 10 | 143 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevd...iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkat 86 l pGf+F+P+d+ lv +L + + + +l++ + e d + + Pw L ++ +++e+e yf ++ g r+ r ++ g W ++ ORGLA02G0112600.1 10 LSPGFKFNPSDQMLVELFLLPYLIDGELPVRGLvLVEDDhlgGLPLPPWILLdRHGRGDEDEAYFVAPMGA--GDGARQVRsVAGGGKWVKQ 99 579***********************988866544444422246679****73444445558888887765..56889999788899**977 PP NAM 87 gk..dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 + + ev+++ +++ + k +L f++ ++++g +t Wvmhey ORGLA02G0112600.1 100 RSegKGEVVVApgGEAFLWEKFSLNFHRDDRRSG-STGWVMHEYI 143 65223344444455566999*******8777776.9********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-26 | 3 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.801 | 10 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-12 | 12 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MAAAARSQGL SPGFKFNPSD QMLVELFLLP YLIDGELPVR GLVLVEDDHL GGLPLPPWIL 60 LDRHGRGDED EAYFVAPMGA GDGARQVRSV AGGGKWVKQR SEGKGEVVVA PGGEAFLWEK 120 FSLNFHRDDR RSGSTGWVMH EYIVSPPAGS AVAASHRATH IAFTGHGQNR KRVPDGYVLV 180 LDDAVPAAAA AAAPPPESEQ SNQEEQEYAA YTDQIQQQCF VPEQQMSNQE YFPEAAAEQS 240 NQQFFVPAEE QSSHQLFLPA EEQSNQQFFM PAEEQSSHQF LPAEEQSSHQ FLPAEEQSNY 300 QQFLPALEQM TQSNQEFAYG EQSQCYIVPE QQQLSNQEYA YSEQSQCYIL PEQQQLSDQE 360 YAYSEQSQCY ILPEQQELSN QEAEYAFVCY DEQQQQQQQS KQEAEYAFAC YDEQQQQQQY 420 LHGDLTSWQE PLVTSSSSSS QQFLGQEQLL PDGLLLDGFG EISQQQGDQE YAYCEESQCY 480 TMPEQQQQSN QEAEFAFACY D |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA02G0112600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004001 | 0.0 | AP004001.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1115_D03. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | I1NZH0 | 0.0 | I1NZH0_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0112600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14326 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 6e-09 | NAC domain containing protein 47 |