PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0091700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 537aa    MW: 58443.6 Da    PI: 6.1403
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0091700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-31118171255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  ORGLA02G0091700.1 118 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 171
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.601114174IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-29114172IPR009057Homeodomain-like
SuperFamilySSF466895.38E-14117172IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-22118173IPR006447Myb domain, plants
PfamPF002499.4E-9119170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MKEKEVLVEI VEDDELKRSI GRNQLDLNEE VMDVESEEGE VGDDEDDEDE EDDDDDDDGG  60
STTDVAGSRS SSNNSSTNNV SESKLKGDKD SGGGRLEGIN GGEQRVPSVR QYNRSKLPRL  120
RWTPDLHMAF VHAVERLGGQ ERATPKLVLQ MMNVRGLSIA HVKSHLQMYR SKKLDHEGRQ  180
IRGAIASVFS PMDFHLMRGD RRFHDMLLQR AAALSSSRPE HGGFFSSRSG GGLPPEASRL  240
YGLLQHRQSP AMATMQTFDF KNSSFRNQEW SFSFNHQRKE TMNPSSSSST TAAIRRWPSA  300
AGAVADVAGE RQRLAERFGY YTGNGGASST SLPLITRAAM AAPPPMFAAA VAPPGRDHHR  360
LPFGWHAGGG GNKNRSSSDP VVIDEALDSR RLEHQQKHVE QPRTTPTTTT TPAGKRPPEW  420
SPPDLQLTLS PTTAPAADGG GAKRSKTSTT TTNTTAAISG EQEAEKNMDR CKNKLSISLS  480
LSPPAAAAAA ANFSSMDLSM EQQKQKQEKT TIGSSEEEAG DLGQSTLDLT MSIRALE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0091700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056130.0AP005613.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625548.10.0uncharacterized protein LOC107275964
TrEMBLI1NYW10.0I1NYW1_ORYGL; Uncharacterized protein
STRINGORGLA02G0091700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-34G2-like family protein