PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0088400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 375aa    MW: 38783.2 Da    PI: 9.567
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0088400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822172.42.3e-5351651145
             DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr..........kgskpl.eeaea 81 
                        gg+gr ptw+ErEnn+rRERrRRaiaakiyaGLRa+Gny lpk++DnneVlkALc+eAGw+ve+DGttyr          ++ k+   ++++
  ORGLA02G0088400.1   5 GGGGRVPTWRERENNRRRERRRRAIAAKIYAGLRAYGNYTLPKHCDNNEVLKALCNEAGWTVEPDGTTYRkywsldrieaAHVKKGlVKEAI 96 
                        689*******************************************************************5544444433233333222333 PP

             DUF822  82 agssasaspesslqsslkssalaspvesysaspk.sssfpspssldsislasa....asllpvlsvlsl 145
                        + +   + p s+l  +l  s  asp++sy++sp+ +ssfps+ s+++i+l       +sl+p+l++ls+
  ORGLA02G0088400.1  97 METKGCKPPASELADQLGRSPSASPCSSYQPSPRgTSSFPSSGSSSQITLGGGggegSSLIPWLKTLSS 165
                        33333345556666788889999********99746899***999999998768899999***999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.4E-606164IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MMNGGGGGRV PTWRERENNR RRERRRRAIA AKIYAGLRAY GNYTLPKHCD NNEVLKALCN  60
EAGWTVEPDG TTYRKYWSLD RIEAAHVKKG LVKEAIMETK GCKPPASELA DQLGRSPSAS  120
PCSSYQPSPR GTSSFPSSGS SSQITLGGGG GEGSSLIPWL KTLSSAGVGI GGGSSSKFPA  180
HYSYFGGGSI SAPVTPPSGS PPRTPRLKTA AWEEYHHHHA GSVLPPWATV GASYAYAASS  240
SLPNSTPPSP RRKVAAAAAA GGGGNDAAAW LAGFQISSAG PSSPTYSLVA PPPNPFGAAA  300
AAAGSSSRVM SGACSPVAGG DVQMADAARR EFAFGGEGGK MTGLVKAWEG ERIHEECGSD  360
DLELTLGSSM TRGDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A5e-20975372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B5e-20975372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C5e-20975372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D5e-20975372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0088400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040700.0AP004070.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1705_E12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624154.11e-178protein BZR1 homolog 4
SwissprotQ6EUF11e-179BZR4_ORYSJ; Protein BZR1 homolog 4
TrEMBLA0A0D9YPQ00.0A0A0D9YPQ0_9ORYZ; Uncharacterized protein
TrEMBLI1NYS80.0I1NYS8_ORYGL; Uncharacterized protein
STRINGOGLUM02G09950.10.0(Oryza glumipatula)
STRINGORGLA02G0088400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.17e-43BES1/BZR1 homolog 4