PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA02G0080400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 28402.9 Da PI: 5.0944 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 120.2 | 1.9e-37 | 12 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrF+Ptde+lvv+yL+++++++++ + i+++d+y+v+Pw+Lp +++++++++ yfF+ ++++ +++r+t sg+Wk tg++k+ ORGLA02G0080400.1 12 MPPGFRFQPTDEQLVVDYLQRRTAAQPCVT-PDITDIDVYNVDPWQLPaMAMYGSDHDRYFFTMAAREV----QTRRTTPSGFWKPTGTKKT 98 79*************************988.55***************778888999*******99976....6899*************** PP NAM 92 vlsk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128 +++ ++ + +k+ +vfy +g++++ +kt+W+mheyrl ORGLA02G0080400.1 99 IFVVageHEVPTAVKRRFVFYlghhqpSGSNNNNNKTSWIMHEYRL 144 *99865555569*********98888778999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-43 | 4 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.31 | 12 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-22 | 13 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAMTPQLAFS RMPPGFRFQP TDEQLVVDYL QRRTAAQPCV TPDITDIDVY NVDPWQLPAM 60 AMYGSDHDRY FFTMAAREVQ TRRTTPSGFW KPTGTKKTIF VVAGEHEVPT AVKRRFVFYL 120 GHHQPSGSNN NNNKTSWIMH EYRLMNSPRA AVPLSSSVNR LPTDDLTEEM VLCRISNKDL 180 PKPPFIHNGL LQFSSVGLNG DGYNYLILDH LEPPAMEYPN VGIGNVDDAA AGTDDPGDLD 240 EEIDDSMQRN HGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-27 | 12 | 178 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-27 | 12 | 178 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-27 | 12 | 178 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-27 | 12 | 178 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-27 | 12 | 178 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-27 | 12 | 178 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA02G0080400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107283 | 0.0 | AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence. | |||
GenBank | EF122479 | 0.0 | EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625739.1 | 0.0 | NAC domain-containing protein 48-like | ||||
TrEMBL | I1NYJ8 | 0.0 | I1NYJ8_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0080400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16540 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 8e-36 | NAC family protein |