PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA02G0069900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 111aa MW: 12145.6 Da PI: 8.7701 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.8 | 1.4e-16 | 10 | 79 | 18 | 86 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +p +f e+hg+ +e +++l+ grsW+v+l++ r +++r vl+ GW +F+ +ngL +gD++ F+ + ORGLA02G0069900.1 10 VPVEFQEAHGYAARE--KVVLR-MLGRSWTVRLKHtkgrRPRRERAVLRYGWHRFCADNGLAVGDTCFFRALR 79 7999*****998666..45544.479*******998887777788************************9654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.633 | 1 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-23 | 8 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.1E-14 | 10 | 79 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.92E-15 | 10 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.34E-13 | 10 | 76 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 111 aa Download sequence Send to blast |
MAAAAAEQNV PVEFQEAHGY AAREKVVLRM LGRSWTVRLK HTKGRRPRRE RAVLRYGWHR 60 FCADNGLAVG DTCFFRALRS AGSGAGDVDD GDGDHVLSVT VHKADGGDPL E |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 45 | 50 | RPRRER |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA02G0069900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878688.1 | 1e-70 | B3 domain-containing protein LOC_Os02g10420, partial | ||||
Swissprot | A3A463 | 2e-60 | Y2042_ORYSJ; B3 domain-containing protein LOC_Os02g10420 | ||||
TrEMBL | A0A0D9YNS2 | 1e-72 | A0A0D9YNS2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1NY93 | 4e-75 | I1NY93_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM02G07480.1 | 2e-73 | (Oryza glumipatula) | ||||
STRING | ORGLA02G0069900.1 | 6e-76 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31630.1 | 7e-07 | B3 family protein |