PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0068500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 218aa    MW: 23367.3 Da    PI: 10.9444
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0068500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.8e-076079120
                       EEETTTTEEESSHHHHHHHH CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                       ++Cp C k+F+r  nL+ H+
  ORGLA02G0068500.1 60 FSCPVCRKTFNRYNNLQMHM 79
                       89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.66E-65482No hitNo description
SMARTSM003550.0556082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4926087IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-66079IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-4131165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.36E-5131165No hitNo description
SMARTSM00355160145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MANHGASASS TGVAGDDGGG GAMAGVGVEV ESVRRSGGGG GGGQYWIPTA AQILAGATQF  60
SCPVCRKTFN RYNNLQMHMW GHGSQYRRGG TAALRGAQPT AMLRLPCYCC AAGCRNHIDH  120
PRARPLKDFR TLQTHYRRRH GARDFACRRC AKRFAVRGDW RTHEKNCGRL WRCACGAHFR  180
HKRSLNDHAR AFGAAHAHAG AAAEDDGRAA AAAAGVLR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0068500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087290.0AK108729.1 Oryza sativa Japonica Group cDNA clone:002-150-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624987.21e-116zinc finger protein WIP5
SwissprotQ9SVY17e-93ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLI1NY791e-155I1NY79_ORYGL; Uncharacterized protein
STRINGORGLA02G0068500.11e-156(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-84C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]