PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0054600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 348aa    MW: 35709.1 Da    PI: 6.658
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0054600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89e-0859104342
           zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                         ++C+ +e  ++   C+ +   lC+ C + +H        H++vp+
  ORGLA02G0054600.1  59 VWVCEVCELAPAAVTCKADAAALCAACDSDIHDAnplarrHERVPV 104
                        689*****************************44788888999986 PP
2CCT69.58.5e-24280323144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R+a+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k+a
  ORGLA02G0054600.1 280 RAARLMRYREKRKNRRFEKTIRYASRKAYAETRPRVKGRFAKRA 323
                        99****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.041361IPR000315B-box-type zinc finger
PROSITE profilePS5011910.60857104IPR000315B-box-type zinc finger
PfamPF006431.4E-558104IPR000315B-box-type zinc finger
SMARTSM003362.8E-862104IPR000315B-box-type zinc finger
PROSITE profilePS5101716.807280322IPR010402CCT domain
PfamPF062031.0E-17280322IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEMELGLGRY WGVGGRRCGA CAVAPAAVHC RTCDGGGGGG GYLCAGCDAE HGRAGHERVW  60
VCEVCELAPA AVTCKADAAA LCAACDSDIH DANPLARRHE RVPVHPIGSS AAPPPDALLL  120
GGENDAAAAV DGGGGGKEVK LDFLFADFMD PYLGGSPELA RFPHADSVVP NHNGSAGPAM  180
ELGFAGGGGA AVKPSYSSYT AASLGNSGSS SEVGLVPDAI CGGGGGIIEL DFAQSKAAYL  240
PYASTPSHSM SSSMDMGVAA PEMSDGAAAA AGRAYAAEGR AARLMRYREK RKNRRFEKTI  300
RYASRKAYAE TRPRVKGRFA KRADDHDAAA PPPQIMLDFA GYGVVPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0054600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096300.0AK109630.1 Oryza sativa Japonica Group cDNA clone:002-138-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623284.10.0zinc finger protein CONSTANS-LIKE 3
TrEMBLI1NXU00.0I1NXU0_ORYGL; Uncharacterized protein
STRINGORGLA02G0054600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.15e-32CONSTANS-like 3