PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0046100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 506aa    MW: 57648.5 Da    PI: 8.0205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0046100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.55.4e-4961441128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                        lppGfrFhP+d+elvv+yL  k+++ +       +            ++ +vd++k+ePwdLp+ +  + kewyf+  +d+kya+g+r+nra
  ORGLA02G0046100.1   6 LPPGFRFHPRDDELVVDYLSGKLRSGDggaA---SggggagagcptpTLIDVDLNKCEPWDLPEIACIGGKEWYFYNLKDRKYARGQRTNRA 94 
                        79**********************9996550...34455555666546999************7666789********************** PP

                NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        t+sgyWkatgkd+e+++ kg+lvg++ktLvfy+grapkge+tdWvmhe+r 
  ORGLA02G0046100.1  95 TESGYWKATGKDREITR-KGSLVGMRKTLVFYRGRAPKGERTDWVMHEFRQ 144
                        ****************9.999****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-543154IPR003441NAC domain
PROSITE profilePS5100551.3396196IPR003441NAC domain
PfamPF023658.0E-247143IPR003441NAC domain
SuperFamilySSF1019411.23E-54184196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MVEARLPPGF RFHPRDDELV VDYLSGKLRS GDGGAASGGG GAGAGCPTPT LIDVDLNKCE  60
PWDLPEIACI GGKEWYFYNL KDRKYARGQR TNRATESGYW KATGKDREIT RKGSLVGMRK  120
TLVFYRGRAP KGERTDWVMH EFRQELDHAN HHHHLKVLAH RFRFQFALDC IISHSHASWQ  180
LDYMQEGWVL CRVFYKSRTE AVAAPTMEST LPPRYINGGT SRSPLPPLVD SSISFNHGGY  240
EEVLPCFSSS HHQQPSPASM NASAAAADDQ DYHHLSEGQR HYSGKKMMRD VQNDQVTTRF  300
DGHLAVKREM SLKKKDLSED EQAAPNADAG GFSILLKYSV SKMTSLMKPM QRNISTLQES  360
LNQKKEAILE KVEIFTKIEL LLPSRLGSTV FQLCLEHFIK NHKVGISWDG IWELSNWEVA  420
DNEVVLKMVG QCSAPADSKS KDLKRLFDLL RPYYEQEGKD PHLFFEHLKF DFTDVLKTIV  480
TCAKWEWFWK YLLNHVFVMP PTGNTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-43214311139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0046100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048630.0AP004863.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17.
GenBankAP0058040.0AP005804.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878697.10.0NAC domain-containing protein 21/22 isoform X1
TrEMBLI1NXK50.0I1NXK5_ORYGL; Uncharacterized protein
STRINGORGLA02G0046100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1753499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.24e-71NAC domain containing protein 1