PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0035900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 237aa    MW: 25593.7 Da    PI: 9.5513
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0035900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-19105159256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ ++t eq + Le+ F+ ++ +s++e++eLA klgL+ rqV vWFqNrRa+ k
  ORGLA02G0035900.1 105 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTK 159
                        788899***********************************************98 PP
2HD-ZIP_I/II114.85.3e-37105193189
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                        +kk+rl+ eq++lLE+sF++++ L++ +K+ela +Lgl++rqv+vWFqnrRARtk+kq+E d++ L+r++d+l+++n+rL+++ +eLr+
  ORGLA02G0035900.1 105 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELRR 193
                        69*************************************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-1884162IPR009057Homeodomain-like
PROSITE profilePS5007117.378101161IPR001356Homeobox domain
SMARTSM003893.2E-16103165IPR001356Homeobox domain
SuperFamilySSF466891.63E-18104170IPR009057Homeodomain-like
CDDcd000865.81E-14105162No hitNo description
PfamPF000466.4E-17105159IPR001356Homeobox domain
PRINTSPR000318.6E-7132141IPR000047Helix-turn-helix motif
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PRINTSPR000318.6E-7141157IPR000047Helix-turn-helix motif
PfamPF021832.5E-7161192IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.2E-10161204IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDSVVDGGLD TRLSLAVGCC PPRRRPVLLF GEVLPSPEKK VAAAAVVAAG KRGREQRGEA  60
EAEATTTRQR RSCKKGRRGR GDDDDDDGDR RSPSGGGGDE EGASRKKLRL TGEQATLLED  120
SFRAHNILSH AEKQELAGKL GLSARQVEVW FQNRRARTKL KQTEADCDLL RRWCDHLAAD  180
NARLRRDLAE LRRSSSSPPV SGLAVATPVV CPSCAHDDKR RLAFATAAAA AGDMASN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109SRKKLRL
2153161RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0035900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054120.0AP005412.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624893.11e-169putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX61e-170HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A0D9YMB21e-168A0A0D9YMB2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0N9W31e-168A0A0E0N9W3_ORYRU; Uncharacterized protein
STRINGOGLUM02G03650.11e-169(Oryza glumipatula)
STRINGORUFI02G03950.11e-169(Oryza rufipogon)
STRINGOS02T0149900-001e-169(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-27homeobox protein 2