PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0022300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 742aa    MW: 81892.1 Da    PI: 6.4172
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0022300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822170.59.1e-53572041138
             DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasasp 90 
                        gg +++++++E+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++s+pl   ++++ g ++ +s+
  ORGLA02G0022300.1  57 GGEREREREREKERTKLRERHRRAITSRMLSGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRASSQPLhpPTPQSPGIFHVNSV 148
                        4678899********************************************************************998999*********** PP

             DUF822  91 esslq.sslkssalaspvesysaspksssfpspssldsislasa.......asllp 138
                        e+++  s+l+s+a+ +p++s+++++++++++spsslds+ +a++        ++ +
  ORGLA02G0022300.1 149 ETPSFtSVLNSYAIGTPLDSQASMLQTDDSLSPSSLDSVVVADQsirnekyGNSDS 204
                        ***99899*********************************998666555433334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.1E-4959211IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.808.3E-171312741IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514452.25E-168312741IPR017853Glycoside hydrolase superfamily
PfamPF013734.9E-81337702IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.7E-50350364IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.7E-50371389IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.7E-50484506IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.7E-50557576IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.7E-50591607IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.7E-50608619IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.7E-50626649IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.7E-50664686IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MSLKHPHSPV LDGDPPPHRR PRGLVSTPPP PAVAADPSPS PSPAAPPPRR RGGGGGGGER  60
EREREREKER TKLRERHRRA ITSRMLSGLR QHGNFPLPAR ADMNDVLAAL ARAAGWTVHP  120
DGTTFRASSQ PLHPPTPQSP GIFHVNSVET PSFTSVLNSY AIGTPLDSQA SMLQTDDSLS  180
PSSLDSVVVA DQSIRNEKYG NSDSVSSLNC LENHQPVELE VVLPPPLAAL LVCGSTVVQL  240
MGGSMAGSAD GHPEEEQXER SGRVGVCAGA AAGAEPVPAA VHSSSSHVVS AVIAAIGSLT  300
RASAALAGDY TRTPYIPVYA SLPMGIINSH CQLIDPEGIR AELMHLKSLN VDGVIVDCWW  360
GIVEAWIPHK YEWSGYRDLF GIIKEFKLKV QVVLSFHGSG ETGSGGVSLP KWVMEIAQEN  420
QDVFFTDREG RRNMECLSWG IDKERVLRGR TGIEAYFDFM RSFHMEFRNL TEEGLISAIE  480
IGLGVSGELK YPSCPERMGW RYPGIGEFQC YDRYMQKNLR QAALSRGHLF WARGPDNAGY  540
YNSRPHETGF FCDGGDYDSY YGRFFLNWYS GILIDHVDQV LSLATLAFDG VETVVKIPSI  600
YWWYRTASHA AELTAGFYNP TNRDGYSPVF RMLKKHSVIL KFVCYGPEFT IQENNEAFAD  660
PEGLTWQVMN AAWDHGLSIS VESALPCLDG EMYSQILDTA KPRHDPDRHH VSFFAYRQLP  720
SFLLQRDVCF SELGNFVKCM HG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12231574211443Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0022300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200490.0AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622759.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLI1NWW70.0I1NWW7_ORYGL; Beta-amylase
STRINGORGLA02G0022300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]